Transcript Information: S_Transcript_480460.p1


Annotated TAIR IDAT5G66810.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: CTLH, C-terminal LisH motif (InterPro:IPR006595); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.1); Has 333 Blast hits to 242 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 47; Plants - 152; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26672926-26676450 | Forward length=750
E-Value6E-43
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9373449175036
Replicate 22.3668893011893
Replicate 31.6252219537273
Condition 2: 8 Hour
Replicate 13.4316720050559
Replicate 21.8000337985987
Replicate 31.9600779406879
Condition 3: 24 Hour
Replicate 12.0087249186753
Replicate 22.0840286506986
Replicate 31.6428151528237


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_480460.p1 GENE.S_Transcript_480460~~S_Transcript_480460.p1 ORF type:5prime_partial len:261 (-),score=62.54 S_Transcript_480460:35-817(-)
GACATACAAGCCCTTGCACATGCTGTTCAGCTCACAAGACAAGGGGCAGTTGACAGTTTAAGATTTGCAAAGGGAGACTTATTTCAAGCTTTTCAGAATGAGATATGCCGGATGAGATTGAATATGTCCATTCTAGATGAACTTGTCCGTGAATACTGTGTGTACCGGGGTATAGTTGACCCTGTTACACCATCTTCTGGATCTGGATTGCCGGGGCTAGCTGAGAATTTGAAGGCAAACCGAGCAGACGCTGGTTGTTCATCTGGAAATGGTTCAGTTGACGTTGATTGTGGGAACAGTAAAACTTCAGATGGCGAATCATCCATCAGTAATGCTCATATTGATGGTTCTGAAATCAGTACAGACATGATCCAGTCACGGGATACAGACGTGGAGATGCGTTTTCCCAGTGAGAATGCAATTAATGTTGATGACTGTAGCACCAGTGGAACTCATCAAGCTAAAAGTTTGAGAGTTTGGGAAAGGAACAGAAGTCCTGCAGTTGGAGAAGGGAGAAGACGCAAGAGGTGGAGAGGGCGAAATGATGATTTAGAATATCCAGTTAGTTTACGGTTTGATGGGAGTCGTAGACTAGAGGGTTCTGAAAAGCTTGGCTCTTTAAATCTGATGCATGATAAGGAGGGCAAATGTGAAACTGTTCTGGCCATAAAGGAACTGGCTAGCAGAGGTATGGCGGCTGAGGTTGTTGAAGAAGTAAATTCGTTGGACCCTGTTTTTTTTCAAACAGAATTCTGCATTGCTGTTCCAATTGAAGCAGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_480460.p1 GENE.S_Transcript_480460~~S_Transcript_480460.p1 ORF type:5prime_partial len:261 (-),score=62.54 S_Transcript_480460:35-817(-)
DIQALAHAVQLTRQGAVDSLRFAKGDLFQAFQNEICRMRLNMSILDELVREYCVYRGIVDPVTPSSGSGLPGLAENLKANRADAGCSSGNGSVDVDCGNSKTSDGESSISNAHIDGSEISTDMIQSRDTDVEMRFPSENAINVDDCSTSGTHQAKSLRVWERNRSPAVGEGRRRKRWRGRNDDLEYPVSLRFDGSRRLEGSEKLGSLNLMHDKEGKCETVLAIKELASRGMAAEVVEEVNSLDPVFFQTEFCIAVPIEAG*

Click here to download the sequence:
Link to NCBI Protein BLAST