Transcript Information: S_Transcript_480875.p1


Annotated TAIR IDATMG00310.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)ORF154
Annotation TypeHomolog
Chromosome PositionchrM:90883-91347 | Reverse length=154
E-Value2E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44355002058634
Replicate 20.55156973893787
Replicate 30.23053420104501
Condition 2: 8 Hour
Replicate 10.35542317195222
Replicate 20.23304008999715
Replicate 30.31085611090598
Condition 3: 24 Hour
Replicate 10.45510173938738
Replicate 20.33051391882173
Replicate 30.42036740675194


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_480875.p1 GENE.S_Transcript_480875~~S_Transcript_480875.p1 ORF type:5prime_partial len:480 (+),score=49.43,RVT_1|PF00078.23|4.4e-37,RVT_1|PF00078.23|7.3e+03 S_Transcript_480875:3-1442(+)
TACTCAAAGGAGGAGATCAAATGTGCGCTGGGCCAAATGCACCCTTTAAAAGCTCCAGGCCCCGATGGTATGTGTCCTCTCTTTTTCCAAACGTACTGGCACATAATTGAGATTGATATTGTTGATATTGTTCTAAAGTACTTAAATGAGGGTCATATGCCTGATGGTTTAAATCATACTTTTATTGTTCTTATCCCCAAGAAGAAAAAGCCAGAGAGGATAACTGAGTATAGACCCATTAGCCTTTGCAATGTACTGTATAAGCTAATCTCCAAAGTCCTTGCAAATAGACTCAAATCAATCCTCCCAGAGGTAGTATCCCTAAACCAGAGTGCTTTTACCCCAGGGCGCCTTATCACGGACAACATTCTAATGGCTTTTGAGATGTTTCATTTTATGAAATATTCGAAGCAGAAGGAGGGTTATGCTGCTCTCAAGTTTGACATGGCCAAGGCCTATGATAGAGTGGAGTGGGAGTTCCTACATAGAGTGCTTCTCACCCTTGGGTTTCATGAGAATTGGGTGGTACGGGTTATGGGGTGTGTTAGTACAGTGTCTTTCTCTATCCTTAACAATGGAAAACCTACTGACATGTTTTCTCCAACCCGGGGACTCCGTCAGGGAGATCCCATTTCACCTTATCTCTTTATACTGGTGGCGGAGGCTCTTTCGGGTCTAATTCGCAAGGCTTGTGAAGACGGGAGTCTGCATGGGGTTCAAATATGTCCGCATGGTCCAGTTATTTCCCATCTATTTTTCACCGACGATAGTCTCCTTTTCTTCAAGGCAACAGTGGAACAAGCCGCTACTCTTAAAAGGATTCTTAGCATGTATGAGCTAGTGTCGGGCCAGAAGGTGAGTTATGAAAAATCCCAAGCCTCTTTTAGTCTAGGGGTTGAGACGACTTGTCGAGAAGCTATTGTCAGGGAACTTGAGGTCAACGAAGTTGCTGCCCATGAAAGGTATTTAGGTCTTCCCATGTCTTTGGGGAGGTCTAAGCAAAGTCTCTCGGGCCCCCTGAAAGAAAGACTATGGAAGAAGCTGCAGGGTTGGAAAGGTATGTTGTTATCTAAGGCAGGTAGAGAGGTCATGATTAAAGCGGTGGCTCAATCTATCTCTACCTATGCAATGAGTGTTTTTAAATTCTCAACTACTTTTTGCAACGAAGTTCGATCTATGGTCTCGCAATTTTTCTGGGGGCAAAAAAAGGAGAGGAAGATGCATTGGGTGGCTTGGAGTAAGTTGTGTCAACCAAAAGGCAAAGGGGGAATGGGGTTCCGAGACTTAAAGCTATTTAACTGGGCCTTGTTGGGCAAACAAGCGTGGAGATTGGCTCGAGGAGAGGGTGGTCTGTTGCAGCAATTGTATAAAGCAAGGTACTACCCCCAAGGAGATTTCCTGTCCACAGGGGTAGGTACAAACCCAAGCTATACATGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_480875.p1 GENE.S_Transcript_480875~~S_Transcript_480875.p1 ORF type:5prime_partial len:480 (+),score=49.43,RVT_1|PF00078.23|4.4e-37,RVT_1|PF00078.23|7.3e+03 S_Transcript_480875:3-1442(+)
YSKEEIKCALGQMHPLKAPGPDGMCPLFFQTYWHIIEIDIVDIVLKYLNEGHMPDGLNHTFIVLIPKKKKPERITEYRPISLCNVLYKLISKVLANRLKSILPEVVSLNQSAFTPGRLITDNILMAFEMFHFMKYSKQKEGYAALKFDMAKAYDRVEWEFLHRVLLTLGFHENWVVRVMGCVSTVSFSILNNGKPTDMFSPTRGLRQGDPISPYLFILVAEALSGLIRKACEDGSLHGVQICPHGPVISHLFFTDDSLLFFKATVEQAATLKRILSMYELVSGQKVSYEKSQASFSLGVETTCREAIVRELEVNEVAAHERYLGLPMSLGRSKQSLSGPLKERLWKKLQGWKGMLLSKAGREVMIKAVAQSISTYAMSVFKFSTTFCNEVRSMVSQFFWGQKKERKMHWVAWSKLCQPKGKGGMGFRDLKLFNWALLGKQAWRLARGEGGLLQQLYKARYYPQGDFLSTGVGTNPSYTW*

Click here to download the sequence:
Link to NCBI Protein BLAST