Transcript Information: S_Transcript_481656.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value1E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.24859481191566
Replicate 30.20780547699832
Condition 2: 8 Hour
Replicate 10.12014304404019
Replicate 20.18905787582868
Replicate 30.18013392342238
Condition 3: 24 Hour
Replicate 10.061534883072096
Replicate 20.19152516825082
Replicate 30.071048012408778


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_481656.p1 GENE.S_Transcript_481656~~S_Transcript_481656.p1 ORF type:5prime_partial len:355 (+),score=57.76,gag_pre-integrs|PF13976.2|4.8e+03,gag_pre-integrs|PF13976.2|2.7e-06,UBN2_2|PF14227.2|7.3e-06,UBN2_2|PF14227.2|2e+03 S_Transcript_481656:3-1067(+)
ATTGGTGATGAAGATAAAGCCGTGTTATTAGTTGTTTCCTTGAATCCTGTGAAGTATAAACACTTCAAAGAAATCATGTTGTATGGAAATAAAACTATGTTGACTCTTGAAGAAGATAAGACTAACCTAGTCTCTAAGGAGAAATTTGATGCTGAACATGGTAAAGTTGATGTTAGGGATGAAGGATTAATTGTTAGAGGTAGGCCCTCTAAAAAGAAAAACTGTGGTGATGGTAGGTCTAAGTCTAGAGGCAAGAACTTTAACAAGACTTGCAAGAATTGTAAGAAACCCAGGCATGTAGTTTATGATTGTTACAAATTGAAGAACAAACTTGATAGGGAGGAAAAGTCCAAGGGCAAGAAATCTATGGAAACACCCGCTGATGCGGGTGTTGTTGATAATCACTTCAATGGTGATGTTTATGTAGCCGTTGATTCCGATGAAAAGGCTAAATTCCAATGGATTCTTGACTCCGGTTGTACCTTTCATATGTGTCCATATCGTGATTGGTTTGATGCTTATGAGTCTATTGACGGGGGCAGCGTCTTCATGGGTTACAATGCTACTTGTAAGGTTGTTGGAAAAGGTAATGTCAAGATCAAGGCTCATGATGAATCTATTCGAATGCTTTCGAGTGTTAGACGTATTTCTGACTTCCGAAGAAATCTTATTTCACTATGTACCCTAGAATCTCTGGGTTGCCACTACTCTGCTCAAGGTAGAGTTTGCAAGGTGTCCAAGGTTGTTCTTGTTGTTATGAAAGGCTCTTGCAAGGTTCCATCATCACGGGTTCCACTGCCATTGTTTCCACATCCACTATCGATGAATGTAAGCTTTGGCATATGTTTAGGGCATATGAGAGAAAAAGGTATGGATATTCTTTGTAAGCGTGGTTTGATTGGCTCTCTTTCACAATCCGAGATTGAATTTTGTGAGCATTGTGTTTATGGGAAACAAAAGAGAGTTAGCTTCTCTCCGAGTATCCATTGGACCAAGGATACCCTTGACTATGCTTACTCCAATTTTTGGGGTCCTTCACAAGTTGTTATAGTAGGTTGTAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_481656.p1 GENE.S_Transcript_481656~~S_Transcript_481656.p1 ORF type:5prime_partial len:355 (+),score=57.76,gag_pre-integrs|PF13976.2|4.8e+03,gag_pre-integrs|PF13976.2|2.7e-06,UBN2_2|PF14227.2|7.3e-06,UBN2_2|PF14227.2|2e+03 S_Transcript_481656:3-1067(+)
IGDEDKAVLLVVSLNPVKYKHFKEIMLYGNKTMLTLEEDKTNLVSKEKFDAEHGKVDVRDEGLIVRGRPSKKKNCGDGRSKSRGKNFNKTCKNCKKPRHVVYDCYKLKNKLDREEKSKGKKSMETPADAGVVDNHFNGDVYVAVDSDEKAKFQWILDSGCTFHMCPYRDWFDAYESIDGGSVFMGYNATCKVVGKGNVKIKAHDESIRMLSSVRRISDFRRNLISLCTLESLGCHYSAQGRVCKVSKVVLVVMKGSCKVPSSRVPLPLFPHPLSMNVSFGICLGHMREKGMDILCKRGLIGSLSQSEIEFCEHCVYGKQKRVSFSPSIHWTKDTLDYAYSNFWGPSQVVIVGCN*

Click here to download the sequence:
Link to NCBI Protein BLAST