Transcript Information: S_Transcript_481657.p3


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value7E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.36771315929191
Replicate 30.20491928981778
Condition 2: 8 Hour
Replicate 10.23694878130148
Replicate 20.37286414399544
Replicate 30.23684275116646
Condition 3: 24 Hour
Replicate 10.60680231918317
Replicate 20.25182012862608
Replicate 30.70061234458656


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_481657.p3 GENE.S_Transcript_481657~~S_Transcript_481657.p3 ORF type:3prime_partial len:180 (+),score=25.01,rve|PF00665.22|1.3e-25,gag_pre-integrs|PF13976.2|2.8e-09,gag_pre-integrs|PF13976.2|2.9e+03 S_Transcript_481657:1012-1548(+)
ATGCGTCTAGGGCATATGGGAGAGAAAGGTATGGATATCCTTTGCAAACATGGTTTCCTTGGCTCACTCTCACATTCTAAAATGGAATTTTGTGAGCACTGTGTTTATGGTAAACAAAAGAGAGTTAGCTTCTCTCCAGGTACTCATAGAACCAAGTCTACACTTGATTATGTTCACTTCGATTTGTGGGGTCCTTCACAAGTTGCTACTGTAGGTGGTAACCGCTACATGATGACTATCATTGATGACTACTCAAGGAAAGTTTGGGTATATTTTCTTAAGCACAAGAATGAGGCTCTAGACAAGTTCAAGGAGTGGAAGATTTTGCTTGAAAATCAAACCGGGAAAAGGCTTAAAAGGTTGAGAACCGATAATGGTTTCGAATTTTGCGATAATGACTTCAAGGAGTTTTGTAAGAATGAAGGTGTAGCTAGACACCTCACCATTGTTGGAAAGCCACAACAAAATGGCGTTGCCGAGAGGATGAACCGAACCATTATGGAGAAGGTTTGTTGTATGCTATCTACCGCCGGTCTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_481657.p3 GENE.S_Transcript_481657~~S_Transcript_481657.p3 ORF type:3prime_partial len:180 (+),score=25.01,rve|PF00665.22|1.3e-25,gag_pre-integrs|PF13976.2|2.8e-09,gag_pre-integrs|PF13976.2|2.9e+03 S_Transcript_481657:1012-1548(+)
MRLGHMGEKGMDILCKHGFLGSLSHSKMEFCEHCVYGKQKRVSFSPGTHRTKSTLDYVHFDLWGPSQVATVGGNRYMMTIIDDYSRKVWVYFLKHKNEALDKFKEWKILLENQTGKRLKRLRTDNGFEFCDNDFKEFCKNEGVARHLTIVGKPQQNGVAERMNRTIMEKVCCMLSTAGL

Click here to download the sequence:
Link to NCBI Protein BLAST