Transcript Information: S_Transcript_48256.p1


Annotated TAIR IDAT5G39960.1
Annotated Gene NameGTP binding;GTP binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15994195-15996820 | Forward length=621
E-Value4.7E-251
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.134362699465
Replicate 210.997241853746
Replicate 311.648043842274
Condition 2: 8 Hour
Replicate 112.775427326208
Replicate 213.817906512772
Replicate 311.944793859138
Condition 3: 24 Hour
Replicate 112.917562683293
Replicate 29.9987404013297
Replicate 310.971198882102


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48256.p1 GENE.S_Transcript_48256~~S_Transcript_48256.p1 ORF type:complete len:646 (+),score=142.70,MMR_HSR1|PF01926.19|7.8e-18,MMR_HSR1|PF01926.19|3e-20,MMR_HSR1|PF01926.19|5.7e+03,KH_dom-like|PF14714.2|2.5e-22,FeoB_N|PF02421.14|8.2e-05,FeoB_N|PF02421.14|1.1e-09,GTP_EFTU|PF00009.23|92,GTP_EFTU|PF00009.23|2.5,GTP_EFTU|PF00009.23|1.2e-07,AIG1|PF04548.12|0.09,AIG1|PF04548.12|4.1e+03,AIG1|PF04548.12|2.5e-06,DUF258|PF03193.12|1.3,DUF258|PF03193.12|17,DUF258|PF03193.12|0.15,DUF258|PF03193.12|26,DUF258|PF03193.12|2e+03,Roc|PF08477.9|0.011,Roc|PF08477.9|0.61,Roc|PF08477.9|7.4e+02,Ras|PF00071.18|0.019,Ras|PF00071.18|0.14,Ras|PF00071.18|6.8e+03,AAA_22|PF13401.2|3.3,AAA_22|PF13401.2|1.2,AAA_22|PF13401.2|74,AAA_22|PF13401.2|3.2e+03,Dynamin_N|PF00350.19|11,Dynamin_N|PF00350.19|3.2e+03,Dynamin_N|PF00350.19|0.014,Dynamin_N|PF00350.19|7.6e+03 S_Transcript_48256:270-2207(+)
ATGCCAAATTCATGTCTTCGAGCAGTTCATATTGGAAAAAGGAGGTACCTTGGGTCGGGTTTCCTTTGCCCCACAAGCTATAGGGTCTCAATTTTCAGTAAAGATAGTTTCTTTACTGAGAATGACGCTTCAAAATCCCATTTCAATGGAGGGGATTTCTCATTTGCAAACCGAACTTCTCGTTGTTCTACTTTTGCTAAAACAAGCGGAGGTGGTGGTTATATCCCCTTTGCCATAAGATCAACTCCTTGTTTGAGGTGCCTATGCACAAGTATTGCTGCTTTCTCCACTTTAGTGGGGCCCAGCACTGCTCCAGTAGAGACATCCGACTCTAAGGATGTGGAGGTTGCTGAAGAGATTTTAGTTCATGATGTGAAAACAAGGAATTCGAGCAGGAAGTCGGTGGACTTCACACAGGTTGACAAGGAGTTGCTTCCTACTGTATTGATCGTGGGTCGGCCAAATGTGGGCAAATCTGCGCTTTTTAATCGTTTGATCCGGCGGAGAGAGGCACTTGTGTATAATACACCTGCTGATCATGTAACTCGTGACATACGAGAAGGAATTGCTAAACTGGGTGATTTAAGGTTTCGTGTCCTTGATTCAGCTGGGTTAGAGGCAGAGGCTACTTCAGGTTCAATTCTAGGACGGACTGCAGACATGACTGCAAATGTGCTGGCTAGGTCCCAGTTTGCCCTCTTCTTGATTGCTGCGAGGGATGGCTTGCAACCCATGGATTTACAGGTTGGGAAGTGGCTGCGCAGACATGCCCCTGGAATCAATATTGTCCTAGTTATGAATAAATCTGAATCACTAGACGAAACAGATGGTTCTCTGGCAGCAGCAGCTGGTGAAGCATATGGATTAGGGTTTGGAGACCCTATTCCGATATCTGCTGAAACTGGACAAGGGATGACAGAACTGTATGGTGCTCTAAGGCCCTTGCTGGAAGAATATATGCTGCAAGTCTTAAATGCTGCTCAGGTCAGTAGTTCCTGTGAATCAGAGGAGTCCAAGTTGCCATTACAGCTTGCAATTGTTGGACGACCAAATGTTGGAAAGTCAACCTTATTGAATACATTATTGCAAGAGGAACGAGTTCTCGTAGGGCCAGAAGCTGGCTTGACAAGAGATTCTATTCGAGCTCAGTTTCAATATGATGGAAGAACTATATATATGGTTGACACTGCCGGGTGGCTGGAAAGGACAAAAGAGAAAGGTCCAGCTTCCTTGAGCATCATGCAGACCAGGAAAAATCTTATGAGGGCTCATGTAGTAGCTTTGGTTCTTGATGGAGAAGAGGTGGCAAATTCAAGAAGGAGCATGAAGCATGCTGAAGTGGTTATTGCAAGACAAGCAGTTGAAGAAGGACGAGGTTTGGTTGTAATTGTGAATAAAATGGATCTCTTGAAAGGAAGACAGAAATCCAAATTATATGAGGATGTCCTCAAAGCTGTTCCTGAAGAGATTCAAAAACTCATACCACAGGTGGCAGGGGTGCCAGTTGTTTTTGTTTCTGCACTGGAGGGAAGAGGCCGGGTAGCGGTCTTGCGTCAGGTCACTGAGACTTATGAGAAATGGTGTCTACGATTGCCAACAGCTCAGCTTAATCGGTGGTTGCGGAAGGTCATGAGCAGGCACTCTTGGAGAGACCAGGCTGCACAACCAAAAATCAAGTACTTCACACAGGTCAAGGCTCGACCCCCGACGTTTGTTGCCTTTGTAAAAGGGAAAACAGAGCTGTCTGACACAGAAATCCGGTTTCTGACCAAATCTTTGAAGGAAGACTTTGATATGGGTGGGATCCCGATTCGGATCTTGCAGCGATCTCTATCAAGAAAAGATGAAGGGGTTGGCAAGAGCTCTTTTGCTAAAAGTAGCCATTCAGGGAAAGTGGTCGAGAGTGCTCCTTCGGATAAACGCAGTGTCGTTGCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48256.p1 GENE.S_Transcript_48256~~S_Transcript_48256.p1 ORF type:complete len:646 (+),score=142.70,MMR_HSR1|PF01926.19|7.8e-18,MMR_HSR1|PF01926.19|3e-20,MMR_HSR1|PF01926.19|5.7e+03,KH_dom-like|PF14714.2|2.5e-22,FeoB_N|PF02421.14|8.2e-05,FeoB_N|PF02421.14|1.1e-09,GTP_EFTU|PF00009.23|92,GTP_EFTU|PF00009.23|2.5,GTP_EFTU|PF00009.23|1.2e-07,AIG1|PF04548.12|0.09,AIG1|PF04548.12|4.1e+03,AIG1|PF04548.12|2.5e-06,DUF258|PF03193.12|1.3,DUF258|PF03193.12|17,DUF258|PF03193.12|0.15,DUF258|PF03193.12|26,DUF258|PF03193.12|2e+03,Roc|PF08477.9|0.011,Roc|PF08477.9|0.61,Roc|PF08477.9|7.4e+02,Ras|PF00071.18|0.019,Ras|PF00071.18|0.14,Ras|PF00071.18|6.8e+03,AAA_22|PF13401.2|3.3,AAA_22|PF13401.2|1.2,AAA_22|PF13401.2|74,AAA_22|PF13401.2|3.2e+03,Dynamin_N|PF00350.19|11,Dynamin_N|PF00350.19|3.2e+03,Dynamin_N|PF00350.19|0.014,Dynamin_N|PF00350.19|7.6e+03 S_Transcript_48256:270-2207(+)
MPNSCLRAVHIGKRRYLGSGFLCPTSYRVSIFSKDSFFTENDASKSHFNGGDFSFANRTSRCSTFAKTSGGGGYIPFAIRSTPCLRCLCTSIAAFSTLVGPSTAPVETSDSKDVEVAEEILVHDVKTRNSSRKSVDFTQVDKELLPTVLIVGRPNVGKSALFNRLIRRREALVYNTPADHVTRDIREGIAKLGDLRFRVLDSAGLEAEATSGSILGRTADMTANVLARSQFALFLIAARDGLQPMDLQVGKWLRRHAPGINIVLVMNKSESLDETDGSLAAAAGEAYGLGFGDPIPISAETGQGMTELYGALRPLLEEYMLQVLNAAQVSSSCESEESKLPLQLAIVGRPNVGKSTLLNTLLQEERVLVGPEAGLTRDSIRAQFQYDGRTIYMVDTAGWLERTKEKGPASLSIMQTRKNLMRAHVVALVLDGEEVANSRRSMKHAEVVIARQAVEEGRGLVVIVNKMDLLKGRQKSKLYEDVLKAVPEEIQKLIPQVAGVPVVFVSALEGRGRVAVLRQVTETYEKWCLRLPTAQLNRWLRKVMSRHSWRDQAAQPKIKYFTQVKARPPTFVAFVKGKTELSDTEIRFLTKSLKEDFDMGGIPIRILQRSLSRKDEGVGKSSFAKSSHSGKVVESAPSDKRSVVA*

Click here to download the sequence:
Link to NCBI Protein BLAST