Transcript Information: S_Transcript_48263.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value1E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.922774755604
Replicate 27.98712262913
Replicate 36.7860512592477
Condition 2: 8 Hour
Replicate 15.1889673768692
Replicate 26.1738336008741
Replicate 35.8191631443866
Condition 3: 24 Hour
Replicate 16.8710909495637
Replicate 28.1374516342375
Replicate 36.286800385845


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48263.p1 GENE.S_Transcript_48263~~S_Transcript_48263.p1 ORF type:3prime_partial len:337 (+),score=43.34,DDE_Tnp_4|PF13359.2|1.8e-14 S_Transcript_48263:418-1425(+)
ATGTCTGAGTACTTAGTTGAGAGTTGGGCTGTGTTTATATTTGACAAGTCTAGTGGTTGTGAGTTGAGTTGTGCTGTAATGTTGTTGGAAAATGGGATGAATATTTGCCGAAAAAATTGCACAGAAATGGAGTCGAATGCACTGTCGTTGATAAGGAAGAGGAGGAAGCGACAAAGGGAGTGTGTTGTCCTAAGAGTTGCGCTTTTTAATATAGCGACAGTGATGTATACAGCACTTCAGAGCTTACGTGCCACTGTTAGTCAGATAAATCACATGCAATATGAGAGAAAAGACAAGAAGCGTCATAGAGTAGAAAGTCTAGCAATGCTGATTAGAGAAAGTGATGTCATGTGTAAGAAGGAACTTCGAATGGATAGGAAGACCTTTTCTGTGCTATGTGAGATGGTTAGGGACATTGGAGGGTTGCGGGGAACTAGAAACATGCCTTTGGAAGAAATTGTCGCCATGTTTTTATACACATTAGCTCATAATAAGAACAATAGGTCGGTGGCAAGTTATTTTTCTAGGAGTGGAGAATCCGTAAGTAGACATTTCAATCGATGCCTCCTTGCGGTCTTGAAGTTGCATCGTGATTTGATGGTCAAAAGGCCTACACCCATGACTGAAGATTGTGAAGATGATACATGGAGATGTTTCAAGAATTGCTTAGGCGCTTTAGATGGAACTTACATTAAAGTCCGTGTTGGAAATGAGGATAGACCAAGATACCGAACAAAGAATGGCAATCTTGCTATGAATGTGTTAGGTGTATGTACACCTAACATGGAATTCGTTTTTGTATCCCCGGGTTGGGAAGGTTCTGCTGATGATGATCGCGTCCTTCAAGATGCTATTTCTAGAACTAACGGTTTAAAGGTGCCTCAAGGTTGTTATTATTTGGTTGATGCCGAATACACTAATTGTGAGGGGTTTCTTGCCCCTTATAGGGGTCACCGGTATCATCTAAAGGAATGGAGTGGTTGGCCACCTATGAGTGCAGAGGAGTGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48263.p1 GENE.S_Transcript_48263~~S_Transcript_48263.p1 ORF type:3prime_partial len:337 (+),score=43.34,DDE_Tnp_4|PF13359.2|1.8e-14 S_Transcript_48263:418-1425(+)
MSEYLVESWAVFIFDKSSGCELSCAVMLLENGMNICRKNCTEMESNALSLIRKRRKRQRECVVLRVALFNIATVMYTALQSLRATVSQINHMQYERKDKKRHRVESLAMLIRESDVMCKKELRMDRKTFSVLCEMVRDIGGLRGTRNMPLEEIVAMFLYTLAHNKNNRSVASYFSRSGESVSRHFNRCLLAVLKLHRDLMVKRPTPMTEDCEDDTWRCFKNCLGALDGTYIKVRVGNEDRPRYRTKNGNLAMNVLGVCTPNMEFVFVSPGWEGSADDDRVLQDAISRTNGLKVPQGCYYLVDAEYTNCEGFLAPYRGHRYHLKEWSGWPPMSAEEC

Click here to download the sequence:
Link to NCBI Protein BLAST