Transcript Information: S_Transcript_48265.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value4E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2877258662184
Replicate 20.71170288895209
Replicate 31.3881629310237
Condition 2: 8 Hour
Replicate 10.68791581668171
Replicate 20
Replicate 31.6044186369341
Condition 3: 24 Hour
Replicate 11.6442385423028
Replicate 20.97478759468161
Replicate 31.6272286712978


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48265.p1 GENE.S_Transcript_48265~~S_Transcript_48265.p1 ORF type:complete len:186 (+),score=25.61 S_Transcript_48265:148-705(+)
ATGGAGTCGAATGCACTGTCTTTGATAAGGAAGAGGAGAAAGCGACAAAGGGAGTGGGTTGTCCTAACAGTTGTGCTTGTTAATATAGCAACAGTGATGTATACAGCACTTCGGAGCTTACGTGCCACTGTTAATCAGATAAATCGCATGCAATATGAGAGAAAAGACAAGAAGCGTCATAGAGTAGAAAGTCTAGCAATGCTGATTAGAGAAAGTGATGTCATGTGTAAGAAGGAACTTCGAATGGATAGGAAGACCTTTTCTGTGCTATGTGAGATGGTTAGGGACATTGGAGGGTTGCGGGGAACTAGAAACATGCCTTTGGAAGAAATTGTCGCCATGTTTTTATACACATTAGCTCATAATAAGAACAATAGGTCGGTGGCAAGTTATTTTTCTAGGAGTGGAGAATCCGTAAGTAGACATTTCAATCGATGCCTCCTTGCGGTCTTGAAGTTGCATCGTGATTTGATGGTCAAAAGGCCTACACCCATGACTGAAGATTGTGAAGATGATACATGGAGATGTTTCAAGGTATCAAAAGAGAACTTATCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48265.p1 GENE.S_Transcript_48265~~S_Transcript_48265.p1 ORF type:complete len:186 (+),score=25.61 S_Transcript_48265:148-705(+)
MESNALSLIRKRRKRQREWVVLTVVLVNIATVMYTALRSLRATVNQINRMQYERKDKKRHRVESLAMLIRESDVMCKKELRMDRKTFSVLCEMVRDIGGLRGTRNMPLEEIVAMFLYTLAHNKNNRSVASYFSRSGESVSRHFNRCLLAVLKLHRDLMVKRPTPMTEDCEDDTWRCFKVSKENLS*

Click here to download the sequence:
Link to NCBI Protein BLAST