Transcript Information: S_Transcript_48270.p2


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value3E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.2804311999604
Replicate 26.335980590876
Replicate 36.6204693633438
Condition 2: 8 Hour
Replicate 15.4680487992649
Replicate 27.1131005931438
Replicate 34.3724815599962
Condition 3: 24 Hour
Replicate 19.1860535704037
Replicate 27.438379184032
Replicate 36.725878508031


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48270.p2 GENE.S_Transcript_48270~~S_Transcript_48270.p2 ORF type:5prime_partial len:195 (+),score=29.33,DDE_Tnp_4|PF13359.2|1e-23,Plant_tran|PF04827.10|1.8e-06 S_Transcript_48270:1-585(+)
CCTAACATGGAATTCGTTTTTGTATCCCCGGGTTGGGAAGGTTCTGCTGATGATGATCGCGTCCTTCAAGATGCTATTTCTAGAACTAACGGTTTAAAGGTGCCTCAAGGTTGTTATTATTTGGTTGATGCCGAATACACTAATTGTGAGGGGTTTCTTGCCCCTTATAGGGGTCACCGGTATCATCTAAAGGAATGGAGTGGTTGGCCACCTATGAGTGCAGAGGAGTGTTTCAACATGAAGCACGCTAAAGCTAGGAATGTAATAAGAAGATGCTTCGGACTCTTAAAAGGAAGGTGGGCTGTTCTAAGGAGCCCGTCATTCTTTCCAATACGAACTCAGGGTCGCATAGTCCATGCATGTGTTATATTGCATAACCTGATTCGGAAGTTGATGCCTACTGATGATATGGTTTATGATGGGGATGAAGATGCTGAGGACGGTGATGATAATGATGGTTATGATGATGATGAAGTCGAATTTATTACTTCTGCTCAATCATCAGATTCTTGGACCACTTTTAGGGATATCTTAGCACAAACTTCATTTAATGAATGGAGAGCTAGATCTTCTAGGGCGACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48270.p2 GENE.S_Transcript_48270~~S_Transcript_48270.p2 ORF type:5prime_partial len:195 (+),score=29.33,DDE_Tnp_4|PF13359.2|1e-23,Plant_tran|PF04827.10|1.8e-06 S_Transcript_48270:1-585(+)
PNMEFVFVSPGWEGSADDDRVLQDAISRTNGLKVPQGCYYLVDAEYTNCEGFLAPYRGHRYHLKEWSGWPPMSAEECFNMKHAKARNVIRRCFGLLKGRWAVLRSPSFFPIRTQGRIVHACVILHNLIRKLMPTDDMVYDGDEDAEDGDDNDGYDDDEVEFITSAQSSDSWTTFRDILAQTSFNEWRARSSRAT*

Click here to download the sequence:
Link to NCBI Protein BLAST