Transcript Information: S_Transcript_48301.p1


Annotated TAIR IDAT2G39720.1
Annotated Gene NameRING-H2 finger C2A
Annotated Gene Symbol(s)RHC2A
Annotation TypeOrtholog
Chromosome Positionchr2:16567506-16568711 | Reverse length=401
E-Value2.5E-102
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 132.955657549216
Replicate 237.457954752439
Replicate 333.758816664085
Condition 2: 8 Hour
Replicate 126.5126474213
Replicate 226.989134354068
Replicate 322.310936313813
Condition 3: 24 Hour
Replicate 129.573785757537
Replicate 231.350677929935
Replicate 336.314786293361


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48301.p1 GENE.S_Transcript_48301~~S_Transcript_48301.p1 ORF type:complete len:407 (+),score=44.04,DUF1117|PF06547.8|2.3e+03,DUF1117|PF06547.8|1.4e-39,zinc_ribbon_9|PF14369.2|4.3e-14,zinc_ribbon_9|PF14369.2|9.3e+03,zinc_ribbon_9|PF14369.2|1.9e+03,zf-RING_2|PF13639.2|1.8e+02,zf-RING_2|PF13639.2|3.5e-12,zf-rbx1|PF12678.3|1.3e-06,zf-RING_11|PF17123.1|5.5e-07,zf-RING_11|PF17123.1|1.1e+04 S_Transcript_48301:190-1410(+)
ATGTCAACAACAGGAACGACCTCCTACTGGTGCTACAGGTGCAACCGGTTCGTCAGAGTATGGTCGAGCCAACATCGTGACACTTCATCATCAATCTCATGTCCGGAATGCTACGGAGGTTTCGTGGAACAAATCGATTCCCCACCTTCCTCTCACTTTTCTGACTCAAGACGACGCCGTTTCCCAGCCGCTGCTATGTACATGGTCGGCGATCAGATCTCGTCCTCTTCGTCTTCCTCCAGCCCTCGACTCCGCCGTAGCCGCCGTAACGGCGGCGACCGCTCTCCATTCAACCCCGTCATCGTTCTCCGTGCCCCCTCCTCCGACTCCGACGCTAACGGTAACGGCGGGGGGTATGAGTTGTATTACGATGACGGTGTGGGTTCGGGGTTAAGGCCTTTGCCGGCGAGCGTTTCGGAGTTTCTATTAGGGTCTGGGTTTGACAGGTTGTTGGATCAGTTGGCCCAGATTGAGATTAATGGGCTGGGCCGAGCGGAGCAGCCCCCTGCCTCGAAGGCGGCGATTGAATCTATGCCGACAATCGAGATTGCGGAGAGTCACGTGATGACGGAGTCTCATTGTGCTGTTTGTAAGGAAGCTTTTGAGCTAGGGGCCGAAGCTAGGGAGATGCCATGTAAGCATATTTATCATCAAGATTGTATCTTGCCTTGGTTGTCCTTGCGTAATTCCTGCCCTGTTTGTCGTCACGAGTTGCCTCCTTCTGGGGGTGCTGGTGATGACTCATCACCACCTGAGAATTTTAATGAGAATAATAGTAGTAGGAGGCATCATCATGTGGTGGAGAATAGTGAGGAGGAGGCGGTGGGGTTGACGATATGGAGGTTGCCGGGAGGAGGGTTTGCGGTGGGCCGTTTTTCGGGAGGGAGGAGAGGCGGCGGCGGTGGTGGTGGAGAAAGAGAGTTGCCTGTTGTTTATACAGAAATGGATGGTGGGTTTAATCAAGGGGGCTTGCCTAGGAGGATTTCTTGGGGTTCTAGAGGTGCTAGGTCTAGGGAAACTACCGGCATTCGTCGTGCTCTCCGAAACTTGTTCGCTTGTTTTGGGGGTATGCATTCCTCTGATACGACTTCCTCGAGCTCTGATCATTCCAGGATTAATAATAATAATAATAGTCAGAGAAGTCGGTCGTTGTCCATCTTCGGCGGCTCCAGGAGGAGAAGTAGGGGTCTTGACATGGCTACTCGCATTAGTAGATGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48301.p1 GENE.S_Transcript_48301~~S_Transcript_48301.p1 ORF type:complete len:407 (+),score=44.04,DUF1117|PF06547.8|2.3e+03,DUF1117|PF06547.8|1.4e-39,zinc_ribbon_9|PF14369.2|4.3e-14,zinc_ribbon_9|PF14369.2|9.3e+03,zinc_ribbon_9|PF14369.2|1.9e+03,zf-RING_2|PF13639.2|1.8e+02,zf-RING_2|PF13639.2|3.5e-12,zf-rbx1|PF12678.3|1.3e-06,zf-RING_11|PF17123.1|5.5e-07,zf-RING_11|PF17123.1|1.1e+04 S_Transcript_48301:190-1410(+)
MSTTGTTSYWCYRCNRFVRVWSSQHRDTSSSISCPECYGGFVEQIDSPPSSHFSDSRRRRFPAAAMYMVGDQISSSSSSSSPRLRRSRRNGGDRSPFNPVIVLRAPSSDSDANGNGGGYELYYDDGVGSGLRPLPASVSEFLLGSGFDRLLDQLAQIEINGLGRAEQPPASKAAIESMPTIEIAESHVMTESHCAVCKEAFELGAEAREMPCKHIYHQDCILPWLSLRNSCPVCRHELPPSGGAGDDSSPPENFNENNSSRRHHHVVENSEEEAVGLTIWRLPGGGFAVGRFSGGRRGGGGGGGERELPVVYTEMDGGFNQGGLPRRISWGSRGARSRETTGIRRALRNLFACFGGMHSSDTTSSSSDHSRINNNNNSQRSRSLSIFGGSRRRSRGLDMATRISRW*

Click here to download the sequence:
Link to NCBI Protein BLAST