Transcript Information: S_Transcript_48330.p1


Annotated TAIR IDAT5G19350.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6518978-6521295 | Forward length=425
E-Value2.7E-82
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6833524877674
Replicate 22.325896489497
Replicate 32.2775668055049
Condition 2: 8 Hour
Replicate 13.2116551682429
Replicate 22.560633278041
Replicate 31.5409046461432
Condition 3: 24 Hour
Replicate 11.6449460459785
Replicate 21.3652898539968
Replicate 31.6713402919053


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48330.p1 GENE.S_Transcript_48330~~S_Transcript_48330.p1 ORF type:internal len:332 (+),score=58.00,RRM_1|PF00076.18|9.6e-12,RRM_1|PF00076.18|9.9e-14,RRM_6|PF14259.2|0.0016,RRM_6|PF14259.2|7.3e-07,RRM_5|PF13893.2|0.017,RRM_5|PF13893.2|0.0023 S_Transcript_48330:3-995(+)
CCTCGCGTTGTCGTTTATTCGGGATTAGGGATTCCCCTTCTCCTCTACCACCCACCCCCTTCCTTAGGGTTTCTCCTTCTCCACGTCCCCCAAATATCTCTCATCTATCATCAAACCCTAACCCTGTCTCCAACCATGATGCAACAGCCTGGAGGAGTGGTCCCACCACCCATGCCACCACCCCAACAAGTGGACTCTACTCAGCAGCCGGCCCCACAGTACGGCCAACCCCCACCACCCGCTGGAGCCGCTCAGCCTCCACCTCAGCAGCCCTGGATGATGATGGCGGGCCCACCTCAACAGCCTCCCTACCAGGCTGGCCCACCACCACCCCAGATGTGGCAGCCCCCACCCGGTGCCGGCCCCGCCCCTCCAGCTCAGCAGCAACAGCAGCAGCCCTACCAGATGTCGGGTGGCCCCGCTGCCGTCACGAGCCCCGATGAGATTCGGTCGCTCTGGATTGGGGACTTGCAGTACTGGATGGATGAGAACTATCTCTATGGTTGCTTCGCCGCCGCCGGCGAGGTTGTGGCAGTGAAAGTTATCCGTAATAAGCAGACCAATCTATCTGAAGGTTATGGGTTTATAGAATTTGCAAACCGTGCTGCAGCAGAACGTACTCTGAATACATACAATGGTGCATTGATGCCACAAACCGAGCAGGCTTTCAGATTGAATTGGGCAACTCTTAGTGCGGGTCAGAGGCGGCAAGATGACAGTCCAGATTATACAGTTTTTGTTGGCGACCTAGCAGCTGACGTTTCTGATGTCATGCTCCAGGAAGCATTTCGAGCCCACTATACATCTGTTAAGGGAGCAAAAGTCATAACTGATCATACTACAGGACGTTCTAAAGGGTATGGGTTTGTGAGGTTTGGGGACGAGGGCGAACAGCAACGTGCCATGACCGAAATGAATGGGGTTGTCTTGTCGACTAGGCCCATGAGGATTGGTCCAGCTGCCAACAAGAAGCCGGCAACTGTTCAGCAAAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48330.p1 GENE.S_Transcript_48330~~S_Transcript_48330.p1 ORF type:internal len:332 (+),score=58.00,RRM_1|PF00076.18|9.6e-12,RRM_1|PF00076.18|9.9e-14,RRM_6|PF14259.2|0.0016,RRM_6|PF14259.2|7.3e-07,RRM_5|PF13893.2|0.017,RRM_5|PF13893.2|0.0023 S_Transcript_48330:3-995(+)
PRVVVYSGLGIPLLLYHPPPSLGFLLLHVPQISLIYHQTLTLSPTMMQQPGGVVPPPMPPPQQVDSTQQPAPQYGQPPPPAGAAQPPPQQPWMMMAGPPQQPPYQAGPPPPQMWQPPPGAGPAPPAQQQQQQPYQMSGGPAAVTSPDEIRSLWIGDLQYWMDENYLYGCFAAAGEVVAVKVIRNKQTNLSEGYGFIEFANRAAAERTLNTYNGALMPQTEQAFRLNWATLSAGQRRQDDSPDYTVFVGDLAADVSDVMLQEAFRAHYTSVKGAKVITDHTTGRSKGYGFVRFGDEGEQQRAMTEMNGVVLSTRPMRIGPAANKKPATVQQK

Click here to download the sequence:
Link to NCBI Protein BLAST