Transcript Information: S_Transcript_48765.p1


Annotated TAIR IDAT1G79090.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:29749551-29752945 | Reverse length=793
E-Value2.8E-272
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.457945371184
Replicate 219.642281749818
Replicate 319.070672873332
Condition 2: 8 Hour
Replicate 116.673066830545
Replicate 216.334552789914
Replicate 315.912965677363
Condition 3: 24 Hour
Replicate 120.605262107143
Replicate 218.576894734711
Replicate 320.323942465157


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48765.p1 GENE.S_Transcript_48765~~S_Transcript_48765.p1 ORF type:complete len:793 (+),score=204.70 S_Transcript_48765:613-2991(+)
ATGGATGGATTTGAAGACCCAAAGAAATTGGGTGACAATTCAAAAGATGGTGCCGTATTTGATGCATCTCAATATGCATTCTTTGGTAATGATGCTCTTGAAGAAGTTGAGTTGGGGGGACTTGGGGATGAGGAGGATGATATCCCAGCGATTGCAGTTGATGATGATTTACAATTTGACCAAGAAGAGGGTGATGGTCTGGGATCTTTTTCCGACGTGGATGATCTTACCAGTACTTTTTCAAAGTTGAATAAGGCGGTCAATGAAACAGGAATTTCAGGCTTTATTGGTGATAGAGGGTCAAGACAAAGTTCAGCTGCTGCCGAATGGGTACAGGATGTTGATTACTCTAATTGGTATGATCAACAAGCATATCATCCTGAAGATGTGAATGATGGCAAAAGGTGGTCTTCCCAGCCATATTCTGCTTCTGCTCGCCTTTCCGAGTCAAAGCCATTGCATAGGACATCATCATATCCTGATCCCCCGCCTCAGTTCTTGCCTCAACAGCATCCCAATCTCTCTAGTGAACCGATTCATGTCCCTAGGTCTTCCTTTCCTTCCTATCCTCCTCCTGGCAGAATGCCACATATGGTTTCACCAAATCACCATGCACAACATCCAAACAATCCATATCTTCCTGCAGGCCAACAGATGGCATTACATTCGCAAACATCCTTTTCAAGTCCTTTATCTGGCATACCCCATGGCCCTAATTTCCCTACAAATATGCCTCCATTTTCCCCACCCAATCAGTCAGGTGATAATCGCCCACCTACACAATGGTTAAATCGTGCAAACCGTCTGAACAATATGTTGCCCCAGCAATTAACTCTTCAAGATGGAATGATGCCACCACAGTTGATGGCTCAGCAGCATCAACAGCAGCAACAGCAGCAGTATAGACTGCACCATCATGCTCCTCCACCTTATGGTCATTTAACTGGGGTGCATTCTCAGTATGCTCCGAACATGTCTCCATCACCACCCATGTTAAACAAGTTTGATGCTATGATGGGGATTTCTGATATCAGAGACCAGAGACCTAGGTCATCGCAGAAGAATAGACCGAATATGCGCTACCCCCAGCAGGGATTTGATACTAATAGTCAGATGGGTGATGGTGCATGGTCTCTGTTCAGGTCAAAGTATATGACAGCTGATGAAATTGAGAATATTCTGAGGATGCAGTTGGCTGCCACACATAGCAATGATCCTTATGTCGATGACTATTACCACCAAGCTTGTCTTGCTAAAAAATCTGTTGGGGCAAGGTTGAAGCATCATTTTTGTCCTAATCTGATCCGAGATCTTCCTCCACGGGCTCGCCCTACTGATGAGCCCCATCCTTTCCTCCAAGTTGAGGCTTTGGGAAGAATTCCCTTTTCTTCTATCCGCAGGCCAAAACCACTTCTTGAAGTGGACCCCCCAAATACCACTTGTTCTGGAAGCAATGAACAGAAAATCATTGATAAACCCCTTGAGCAGGAACCTATGCTGGCTGCAAGAGTGACTATTGAGGATTGTCTTTGTCTTCTTCTTGATGTAGATGATATAGATCGTTTCCTTCAATTTAATCAATTCCCAGATGGTGGTGCTGAATTGAGACAGCGACGACAAAGCCAGCTGGAAGGATTGGCAGCTTCCCTTCAGCTGGTAGATCCACTTGGTAAAGGTGGACAAACTCCTAAGGATGATTTTGTTTTCATACGAATAATTTCTCTTCCAAAGGGACGGAAGCTTCTAGGGAAGTACCTTGAGGTGCTTCTTCCTGGCACAGAGCTCCATCGAGTTGTCTGCATGGCCATTTTTCGTCATTTGAGATTCCTGTTTGGTGTGCTTCCATCTGATCCAGCAGTTGCTGAGGTGACTGTTAACCTTGCAAAGATTGTATCATCATGTGTTGTTGGGATGGATCTCAATGGATTAAGTGCTTGCCTTGCTGCGGTAGTTTGTTCCTCAGAGCCACCTCCACTTCGGCCCATTGGGAGCTCTGCTGGAGATAGTGCTTCGGTTGTCCTAAAGTCAGTTCTGGATAGAGCAACTGAGCTTCTTAGGGACCCTCATGTGACTGGCACATATAATGTGTCAAATCCAGCCTTCTGGCAGGCATCATTTGATGAATTTTTCAATTTGCTTCTAAAATACTGTTTTAACAAGTATGACAGCATCGTTCAGCCGCTGCACATGCAAGCTTCATCAAATATGGCTGCTATTGGATCTGATGTGGCTAGAGCTATTAAGAGGGAAATGCCTGTCGAACTGTTGCGAGCAAGCCTTCCTCATACTAATGATCACCAGCGAAAGCTCTTAATGGAGCTTGCACAACGCTCTGTGCCTGTAGTGGGCTCCGGTGGAAATGGTAGTCTTGATGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48765.p1 GENE.S_Transcript_48765~~S_Transcript_48765.p1 ORF type:complete len:793 (+),score=204.70 S_Transcript_48765:613-2991(+)
MDGFEDPKKLGDNSKDGAVFDASQYAFFGNDALEEVELGGLGDEEDDIPAIAVDDDLQFDQEEGDGLGSFSDVDDLTSTFSKLNKAVNETGISGFIGDRGSRQSSAAAEWVQDVDYSNWYDQQAYHPEDVNDGKRWSSQPYSASARLSESKPLHRTSSYPDPPPQFLPQQHPNLSSEPIHVPRSSFPSYPPPGRMPHMVSPNHHAQHPNNPYLPAGQQMALHSQTSFSSPLSGIPHGPNFPTNMPPFSPPNQSGDNRPPTQWLNRANRLNNMLPQQLTLQDGMMPPQLMAQQHQQQQQQQYRLHHHAPPPYGHLTGVHSQYAPNMSPSPPMLNKFDAMMGISDIRDQRPRSSQKNRPNMRYPQQGFDTNSQMGDGAWSLFRSKYMTADEIENILRMQLAATHSNDPYVDDYYHQACLAKKSVGARLKHHFCPNLIRDLPPRARPTDEPHPFLQVEALGRIPFSSIRRPKPLLEVDPPNTTCSGSNEQKIIDKPLEQEPMLAARVTIEDCLCLLLDVDDIDRFLQFNQFPDGGAELRQRRQSQLEGLAASLQLVDPLGKGGQTPKDDFVFIRIISLPKGRKLLGKYLEVLLPGTELHRVVCMAIFRHLRFLFGVLPSDPAVAEVTVNLAKIVSSCVVGMDLNGLSACLAAVVCSSEPPPLRPIGSSAGDSASVVLKSVLDRATELLRDPHVTGTYNVSNPAFWQASFDEFFNLLLKYCFNKYDSIVQPLHMQASSNMAAIGSDVARAIKREMPVELLRASLPHTNDHQRKLLMELAQRSVPVVGSGGNGSLDG*

Click here to download the sequence:
Link to NCBI Protein BLAST