Transcript Information: S_Transcript_4877.p1


Annotated TAIR IDAT1G19170.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6616777-6618875 | Forward length=506
E-Value2.9E-280
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.327021186874
Replicate 210.849057674976
Replicate 312.422173477797
Condition 2: 8 Hour
Replicate 111.367666739298
Replicate 213.774402674873
Replicate 312.639769137665
Condition 3: 24 Hour
Replicate 110.335699006913
Replicate 210.161254363776
Replicate 39.6927691308917


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_4877.p1 GENE.S_Transcript_4877~~S_Transcript_4877.p1 ORF type:complete len:484 (+),score=70.39,Glyco_hydro_28|PF00295.13|7.2e-49,Pectate_lyase_3|PF12708.3|4.2e-16,Pectate_lyase_3|PF12708.3|0.29,Beta_helix|PF13229.2|8.2e-06,Beta_helix|PF13229.2|2.2e+02 S_Transcript_4877:241-1692(+)
ATGTTCCATCAACATAGACAAGAATTCAAGAGATGGGTACCTTCATTTTTGTCCAATCACAAAACCCTTTTCACAGTTTTGTGGATCTTGGGTTTTGCCTCTGTGTTTCTATGGCAAAGAAATATTGTTGATGGGTTGCTTGTTTATAGGAGAGTTCCTGTCAGGCCTATCCCAAAGCTTAGACCTTCTGTGTTTAACGTCACTGATTTTGGGGCAGTTGGTGATGGTTTGACTGATAATACTGCAGCCTTTGAGAGGGCTGTTTCTGCCATTGCTAAGTTGGCTAAAAAGGGTGGTGCTCAGCTTAATATCCCTCCTGGTTTTTGGCTTACTTGTCCTTTTAACTTGACTAGCCATATGACTTTGTTTCTTGCTGAAGATGCTGTCATTCTTGGTGTTAATGATGAGAAGAAGTGGCCTTTGATGCCACCATTGCCATCATATGGTTATGGAAGGGAGCATCCTGGACCTCGATATGGAAGTTTGATTCATGGACAAAATCTCAGAGATGTTGTCATCACCGGGAACAATGGTACAATTGATGGACAAGGACAAACATGGTGGAAGAAGTATCGACAAAAACTGCTCAATCACACTAGAGGTCCTCTTGTACAGATCATGTGGTCAAGTGACATTGTCATTTCTAACATCACATTGCGTAATTCTCCTTTCTGGACATTACATCCTTATGACTGCAAGAATGTCACTATTCGGAACGTCACTATTTTGGCTCCTGTAAGAGAGGCTCCAAACACCGATGGTATTGATCCTGATTCCTGTGAAGACATGGTGATCGAGGACTGTTATATCTGTGTCGGAGATGATGGAATAGCAATCAAGAGCGGTTGGGATCAGTACGGTATTGCTTATGGGAGGCCCTCCAAAAACATTCTCATCCGCAATCTTGTTGTTCGATCTGAGGTTAGTGCGGGTGTATCAATAGGAAGCGAGATGTCCGGTGGCGTCTCAAACGTCACAGTGGAGAATGTCCTAGTCTGGAGTTCCAGACGAGCTATCCGGATCAAAACTGCACCAGGCAGGGGAGGATACGTACGACACATAACCTATCGGAATCTGACATTTGAGACTGTCCGTGTAGGGATCATCATCAAGACGGATTACAATGAACACCCAGACGAGGGTTACGATCCCAAAGCCGTCCCAGCAATCGAGAACATAAGTTTCACTTCAATCCACGGCCAGGCAGTTCGTGTGCCTGTAAGAATACACGGGAGTGAGGAAATCCCCGTGAGGAACATCACTTTCCGAGACATGTCTGTAGGACTGCAGTACAAGAAGAAGCACATCTTCCAGTGCGCCTTTGTACAAGGCCGAGTCATGGGGACCATATTCCCATCGCCATGCGACAATCTTGATTTGTACGACGAAAAGGGAAAACTTGTGAGACGGTCTGCTTCACAGAACATAACAGACATAGATTATGACATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_4877.p1 GENE.S_Transcript_4877~~S_Transcript_4877.p1 ORF type:complete len:484 (+),score=70.39,Glyco_hydro_28|PF00295.13|7.2e-49,Pectate_lyase_3|PF12708.3|4.2e-16,Pectate_lyase_3|PF12708.3|0.29,Beta_helix|PF13229.2|8.2e-06,Beta_helix|PF13229.2|2.2e+02 S_Transcript_4877:241-1692(+)
MFHQHRQEFKRWVPSFLSNHKTLFTVLWILGFASVFLWQRNIVDGLLVYRRVPVRPIPKLRPSVFNVTDFGAVGDGLTDNTAAFERAVSAIAKLAKKGGAQLNIPPGFWLTCPFNLTSHMTLFLAEDAVILGVNDEKKWPLMPPLPSYGYGREHPGPRYGSLIHGQNLRDVVITGNNGTIDGQGQTWWKKYRQKLLNHTRGPLVQIMWSSDIVISNITLRNSPFWTLHPYDCKNVTIRNVTILAPVREAPNTDGIDPDSCEDMVIEDCYICVGDDGIAIKSGWDQYGIAYGRPSKNILIRNLVVRSEVSAGVSIGSEMSGGVSNVTVENVLVWSSRRAIRIKTAPGRGGYVRHITYRNLTFETVRVGIIIKTDYNEHPDEGYDPKAVPAIENISFTSIHGQAVRVPVRIHGSEEIPVRNITFRDMSVGLQYKKKHIFQCAFVQGRVMGTIFPSPCDNLDLYDEKGKLVRRSASQNITDIDYDI*

Click here to download the sequence:
Link to NCBI Protein BLAST