Transcript Information: S_Transcript_487816.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.18145228114896
Replicate 20.050142703539806
Replicate 30.33532247424728
Condition 2: 8 Hour
Replicate 10.33926757322712
Replicate 20.71183154762766
Replicate 30.19378043277256
Condition 3: 24 Hour
Replicate 10.19858984991449
Replicate 20.20603465069407
Replicate 30.22929131277378


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_487816.p1 GENE.S_Transcript_487816~~S_Transcript_487816.p1 ORF type:3prime_partial len:440 (+),score=63.74,UBN2_3|PF14244.2|2.2e-30,UBN2_3|PF14244.2|5.7e+03 S_Transcript_487816:195-1511(+)
ATGACTGATGGTGAAGGTCAGAAAATTGATGGGAAAAGAGTTCCTAAAACACAGGACCCTTCTTCCATATATTATCTCTCAAACCTGGACTCTCTTGGTATAACTGTGACTGATATTAAACTCAAAGGAACTGGAAATTATGAAGAGTGGGCGGCTGTCCTTGTTAATGCATTTCGTGCTCGTAAAAAGATTGGGTTCATTGATGGTAGATTCAAGAAACTAGCCAATGACTCACTCGATTTCGAGGATTGGGAGAGCGTAAATTCAACACTCATGTCTTGGATTATGCAAACTTTAGACCCAGTTGTGCGCTCAATGCTATCATACAAAGACAGTGCTAAAGCGTTATGGGACGACATCAAAACTCGCTATATTGTTCATGATGGAGTTCGACTTCAAGAATTGAAGGAGGCTCTTGTTGAATGTAAGTCCGTCGGTTTCGATGTTGCTAATTACTTTTGTCGTTTCAATGCTTTGTGGGAAGAATATCTTGGTCTACTGCCATACTCTAAATGCAAGTGTGGAAAATGTGAACATGACTTGGAAGGACAACATAAAGAAAACATGGAGAAAGAAAAGGTGCATCAATTTATTATGGGACTTGATAACACCACATATGCCTACATACGCTCAAAAATTCTTGCAACCGAACCGATGCCGGATATGAATAGAGCATATTCAATGGTGTCACAAGAGGAGCGTCAAAATAAAATGGGACGTGGGAAAGAGCAGCGTACCGAGACCTTAAGCTATGCTGTTCAATTACCACAACCACTACCAAAAGCGGGAGCACACCCCAACAGCAACAATGTCACTTTTAACCCAAAGCCTCGTTGTTCTCATTGCAACCGCACTGGACATGACGTGAGTCAATGCTACCAATTGCATGGATACCCGGAAGGGTGGAGCACAAGAGGAAATGGTAGACGTGGTAAAGAGCGTGGCTCAAACCGAGGATCAGGTCGTGCTGTTACGCATGCCAATTCAGCTCGTGGTGGAGAAAGTGGCGCCGCAGGTGTTGTGGTTGGAGCGGTAGACCGTAGCACCCTGCCTTCAATGTCTGACTCAGATTGGGCTGTCATCGAGAGAGTTCTAAATGCTCACAAACAGACAAATGCCTTTGGTTCCAAAAAACTTACTGGTAAGAACTCTCACAATGAATGGCTCTTGGATTCGGGAGCCTCTCAACATATGACAGGTACTTGTGAACTCTTAACTGATGTTAAAAATATAGTTGCTTGTCCTATAACTTTGCCTAATGGTAAGACTACATCAGCAACTCAAGAAGGCACTTTATACATGGGAGATAATGTTGTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_487816.p1 GENE.S_Transcript_487816~~S_Transcript_487816.p1 ORF type:3prime_partial len:440 (+),score=63.74,UBN2_3|PF14244.2|2.2e-30,UBN2_3|PF14244.2|5.7e+03 S_Transcript_487816:195-1511(+)
MTDGEGQKIDGKRVPKTQDPSSIYYLSNLDSLGITVTDIKLKGTGNYEEWAAVLVNAFRARKKIGFIDGRFKKLANDSLDFEDWESVNSTLMSWIMQTLDPVVRSMLSYKDSAKALWDDIKTRYIVHDGVRLQELKEALVECKSVGFDVANYFCRFNALWEEYLGLLPYSKCKCGKCEHDLEGQHKENMEKEKVHQFIMGLDNTTYAYIRSKILATEPMPDMNRAYSMVSQEERQNKMGRGKEQRTETLSYAVQLPQPLPKAGAHPNSNNVTFNPKPRCSHCNRTGHDVSQCYQLHGYPEGWSTRGNGRRGKERGSNRGSGRAVTHANSARGGESGAAGVVVGAVDRSTLPSMSDSDWAVIERVLNAHKQTNAFGSKKLTGKNSHNEWLLDSGASQHMTGTCELLTDVKNIVACPITLPNGKTTSATQEGTLYMGDNVV

Click here to download the sequence:
Link to NCBI Protein BLAST