Transcript Information: S_Transcript_48797.p1


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value7E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.47951353576902
Replicate 20.4969096747188
Replicate 31.3292062042235
Condition 2: 8 Hour
Replicate 11.1527238009261
Replicate 20.70541865080219
Replicate 30.86415598398573
Condition 3: 24 Hour
Replicate 10.49200188041879
Replicate 20.81671393067918
Replicate 30.11361281263566


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48797.p1 GENE.S_Transcript_48797~~S_Transcript_48797.p1 ORF type:complete len:222 (+),score=41.61 S_Transcript_48797:131-796(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCACAACATTCTCTCAAAATTACCTGCGCCATCATTCGCAATTGCAGCTTGTGTTAATCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCCCTCCCCGAAGCAGTGAAAGAGGTTCTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTACTTGCCAAGATTTTGCTTTGATCGAAGCTCATCAACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCACTGACGGATCACTTCAGCGAGGTGAAGTTCCCATATGAAGAGGATCATGGTGGACCTGCTGAGTTTGCAGGAATTTCACTGACTGTTGGATGTGTACCTGGATTAAAAGTGGATGCCATTCCACTATTAGTCGATGATGAGGGAGCTTGCATTGATGAATTTGTGATGGAGATAAGGAATTTCTCAGCTTTTGTGTCAGGTTGCACATCCCCTGAAGCAATTTGGAGATACGGAAGCCGATATGATGCCTGTCCTTGGAAAATTAGACGCATTCCGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48797.p1 GENE.S_Transcript_48797~~S_Transcript_48797.p1 ORF type:complete len:222 (+),score=41.61 S_Transcript_48797:131-796(+)
MDNPPKQASPSTIDRITQLGDDLLHNILSKLPAPSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVLGKVLSGPIQPHFVICTCQDFALIEAHQLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVKFPYEEDHGGPAEFAGISLTVGCVPGLKVDAIPLLVDDEGACIDEFVMEIRNFSAFVSGCTSPEAIWRYGSRYDACPWKIRRIP*

Click here to download the sequence:
Link to NCBI Protein BLAST