Transcript Information: S_Transcript_48798.p1


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value1.5E-109
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.645200494072
Replicate 211.693278465483
Replicate 314.311563200874
Condition 2: 8 Hour
Replicate 116.335248982924
Replicate 217.718504122664
Replicate 316.327939265416
Condition 3: 24 Hour
Replicate 112.014685919827
Replicate 212.374441120686
Replicate 312.409245847317


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48798.p1 GENE.S_Transcript_48798~~S_Transcript_48798.p1 ORF type:complete len:500 (+),score=104.73,FIST_C|PF10442.5|1.6e-08 S_Transcript_48798:131-1630(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCGCAACATTCTCTCAAAATTACCAGCCCAATCATTCGCAATTGCAGCTTGTGTTAATCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCTCTTCCCGAAGCTGTGAAAGAGGTTTTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTACTTGTCAAGATTTTGCCTTGATCGAAGCTCATCGACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCACTGACGGATCACTTCAGCGAGGTGAAGTTCCCATATGAAGAGGATCATGGTGGACCTGCTGAGTTTGCAGGAATTTCACTGACTGTTGGATGTGTACCTGGATTAAAAGTGGATGCTATCCCACTATTAGTCGATGATGAGGGAGCTTGCATTGATGAATTTGTGATGGAGATAAGGAATTTCTCAGCTTTTGTGTCAGGTTGCACATCCCCTGAAGCAATTATCATGTTTGGAGATACGGAAGCTGATATGATGCCTGTTCTTGAAAAATTAGATTACACATTCCGTAAACAGACCATTATTGCTGGAAATGAAGGCTGCCATTTCAAGTGTAGCAGTCACTTGAATTGTGTCTGCATGAATGAGATAGGAACACCTCCACCTTCTTCTGATGCTGTTGCTCTGGTATTTTCCAGGGACAGAAGTAAATTGAGTGCAGGTATTGGGAAAATTGAATTCCATTTTTCCCTAGGAGCTGGGCTTTCTGCTTTGGGTCCAACATATAAAGTAGTTTCTGCCAAAATGAGAACAAGTGCATCTTCAACGTGGCTGACTGCCAAACGACAGGGAGAAAATGAGGCTCTTGATGGTCAACAAATGCTGAGTGATATTGACATGGAGGATATGGAGAGTGATTTGTACATTGGGGTTACAAAGAGAAGAAAATATTCAATCGGTTCAGAAAGGAAGATTAAATTAGTGAGATGCATGGCTTCTCATCCTGTTCATGATGCAGATGAGGAGTATTTATATGTTCGTGGTGGGGATATCAAGACTGGAGATCCTTTTCGATTTTATGTTCCTGATCCAGAACTCGCTTTATCCTTGTGTCCCTCAGTTTCCGAAAACATTAGACACCTGAAGCATAAGGAAATCATTGGAGGGTTTATCTTCACTTGTTGTGGTCGGGGTTTGCCCTTTTTCGACAAACCAAATGTGGATAGCTCCCCCATCTTGGACAACTTTCCTTGTGCTCCACTGACAGGAATGTTCTGTGGCGGGGAAATTGGTCGTGGGCCCCATTCAGATGAGTATCGAGAACAGGACTGTCCAAACAGCTACTTGCATGCTTATAGTTCTGTTTACTTGCTCATTTCATACACTCCGCCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48798.p1 GENE.S_Transcript_48798~~S_Transcript_48798.p1 ORF type:complete len:500 (+),score=104.73,FIST_C|PF10442.5|1.6e-08 S_Transcript_48798:131-1630(+)
MDNPPKQASPSTIDRITQLGDDLLRNILSKLPAQSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVFGKVLSGPIQPHFVICTCQDFALIEAHRLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVKFPYEEDHGGPAEFAGISLTVGCVPGLKVDAIPLLVDDEGACIDEFVMEIRNFSAFVSGCTSPEAIIMFGDTEADMMPVLEKLDYTFRKQTIIAGNEGCHFKCSSHLNCVCMNEIGTPPPSSDAVALVFSRDRSKLSAGIGKIEFHFSLGAGLSALGPTYKVVSAKMRTSASSTWLTAKRQGENEALDGQQMLSDIDMEDMESDLYIGVTKRRKYSIGSERKIKLVRCMASHPVHDADEEYLYVRGGDIKTGDPFRFYVPDPELALSLCPSVSENIRHLKHKEIIGGFIFTCCGRGLPFFDKPNVDSSPILDNFPCAPLTGMFCGGEIGRGPHSDEYREQDCPNSYLHAYSSVYLLISYTPP*

Click here to download the sequence:
Link to NCBI Protein BLAST