Transcript Information: S_Transcript_48799.p1


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value3E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.214993437807
Replicate 22.9614482627537
Replicate 32.8468653014954
Condition 2: 8 Hour
Replicate 14.1505793234688
Replicate 23.7536658791488
Replicate 32.5750688381857
Condition 3: 24 Hour
Replicate 12.052539388378
Replicate 22.7379101233171
Replicate 32.8776829187045


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48799.p1 GENE.S_Transcript_48799~~S_Transcript_48799.p1 ORF type:complete len:149 (+),score=19.94,F-box|PF00646.29|1.9e-05 S_Transcript_48799:131-577(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCACAACATTCTCTCAAAATTACCTGCGCCATCATTCGCAATTGCAGCTTGTGTTAATCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCCCTCCCCGAAGCAGTGAAAGAGGTTCTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTGCTTGCCAAGATTTTGCCTTGATCGAAGCTCATCGACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCACTGACGGATCACTTCAGCGAGGTAAAGTGGTCCTATGAACACGTGTTGGCCTTGGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48799.p1 GENE.S_Transcript_48799~~S_Transcript_48799.p1 ORF type:complete len:149 (+),score=19.94,F-box|PF00646.29|1.9e-05 S_Transcript_48799:131-577(+)
MDNPPKQASPSTIDRITQLGDDLLHNILSKLPAPSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVLGKVLSGPIQPHFVICACQDFALIEAHRLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVKWSYEHVLALD*

Click here to download the sequence:
Link to NCBI Protein BLAST