Transcript Information: S_Transcript_48802.p1


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value2E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.83491768580958
Replicate 21.6438941238933
Replicate 31.6634624702855
Condition 2: 8 Hour
Replicate 11.2544347245372
Replicate 21.4914565759818
Replicate 31.0030987108226
Condition 3: 24 Hour
Replicate 11.7133241953407
Replicate 20.97765461701891
Replicate 31.3847396928299


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48802.p1 GENE.S_Transcript_48802~~S_Transcript_48802.p1 ORF type:complete len:255 (+),score=46.05,F-box|PF00646.29|1.2e-05 S_Transcript_48802:131-895(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCGCAACATTCTCTCAAAATTACCAGCCCAATCATTCGCAATTGCAGCTTGTGTTAATCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCTCTTCCCGAAGCTGTGAAAGAGGTTTTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTACTTGTCAAGATTTTGCCTTGATCGAAGCTCATCGACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCACTGACGGATCACTTCAGCGAGGTGAAGTTCCCATATGAAGAGGATCATGGTGGACCTGCTGAGTTTGCAGGAATTTCACTGACTGTTGGATGTGTACCTGGATTAAAAGTGGATGCTATTCCACTATTAGTCGAAGATGAGGGAGCTTGCATTGATGAATTTGTGATGGAGATAAGGAATTTCTCAGCTTTTGTGTCAGGTTGCACATCCCCTGAAGCAATTATCATGTTTGGAGATGCGGAAGCCGATATGATGCCTGTCCTTGGAAAATTAGGTGAGCTTCATTCCTCCTTTTATAATTGCATTTTGAGTCATGCCATAACCCACCTTGGCGCCTTTCACGAGGCTCTATTCCAAGTTGGTTTTGGAGAAAACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48802.p1 GENE.S_Transcript_48802~~S_Transcript_48802.p1 ORF type:complete len:255 (+),score=46.05,F-box|PF00646.29|1.2e-05 S_Transcript_48802:131-895(+)
MDNPPKQASPSTIDRITQLGDDLLRNILSKLPAQSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVFGKVLSGPIQPHFVICTCQDFALIEAHRLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVKFPYEEDHGGPAEFAGISLTVGCVPGLKVDAIPLLVEDEGACIDEFVMEIRNFSAFVSGCTSPEAIIMFGDAEADMMPVLGKLGELHSSFYNCILSHAITHLGAFHEALFQVGFGEN*

Click here to download the sequence:
Link to NCBI Protein BLAST