Transcript Information: S_Transcript_48803.p2


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value2E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3088361263204
Replicate 21.4467402988534
Replicate 32.1163795505771
Condition 2: 8 Hour
Replicate 11.6605836722358
Replicate 20.7335032340894
Replicate 31.4851205298553
Condition 3: 24 Hour
Replicate 12.3277334867027
Replicate 21.9505739471446
Replicate 31.1370593789192


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48803.p2 GENE.S_Transcript_48803~~S_Transcript_48803.p2 ORF type:complete len:244 (+),score=47.73,F-box|PF00646.29|1.2e-05 S_Transcript_48803:131-862(+)
ATGGACAACCCACCGAAACAAGCATCACCCTCCACCATCGACAGAATAACCCAACTCGGAGATGATCTTCTCCGCAACATTCTCTCAAAATTACCAGCCCAATCATTCGCAATTGCAGCTTGTGTTAATCGCACTTGGAATGGCGTTTGTTCTCACATTCTCTCTCGTCCTCTCCTCTCCTCTGCCATCTCTCTCAACCCCTCTCTTCCCGAAGCTGTGAAAGAGGTTTTCGGCAAGGTTCTTTCTGGCCCAATTCAACCCCATTTCGTCATTTGTACTTGTCAAGATTTTGCCTTGATCGAAGCTCATCGACTTATAACTGAGAAATTGGGCACTTCAATCCCTGTTATTACTTGTGATGCTGCTGGGATTATTGGCAGAGATGCACTGACGGATCACTTCAGCGAGGTGAAGTTCCCATATGAAGAGGATCATGGTGGACCTGCTGAGTTTGCAGGAATTTCACTGACTGTTGGATGTGTACCTGGATTAAAAGTGGATGCTATTCCACTATTAGTCGAAGATGAGGGAGCTTGCATTGATGAATTTGTGATGGAGATAAGGAATTTCTCAGCTTTTGTGTCAGGTTGCACATCCCCTGAAGCAATTATCATGTTTGGAGATGCGGAAGCCGATATGATGCCTGTCCTTGGAAAATTAGGGGAAGAACTGCGTGCATCCAACTCCTCCCTACCCCGCTTGAGCGGAAGTCCTATTAGGGCATTGGGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48803.p2 GENE.S_Transcript_48803~~S_Transcript_48803.p2 ORF type:complete len:244 (+),score=47.73,F-box|PF00646.29|1.2e-05 S_Transcript_48803:131-862(+)
MDNPPKQASPSTIDRITQLGDDLLRNILSKLPAQSFAIAACVNRTWNGVCSHILSRPLLSSAISLNPSLPEAVKEVFGKVLSGPIQPHFVICTCQDFALIEAHRLITEKLGTSIPVITCDAAGIIGRDALTDHFSEVKFPYEEDHGGPAEFAGISLTVGCVPGLKVDAIPLLVEDEGACIDEFVMEIRNFSAFVSGCTSPEAIIMFGDAEADMMPVLGKLGEELRASNSSLPRLSGSPIRALG*

Click here to download the sequence:
Link to NCBI Protein BLAST