Transcript Information: S_Transcript_48842.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value5E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.3645616607559
Replicate 20.30222999393856
Replicate 30.12632011016165
Condition 2: 8 Hour
Replicate 10.29212863448127
Replicate 20.15323183999813
Replicate 31.0219926933895
Condition 3: 24 Hour
Replicate 10.1496224896616
Replicate 20.15523158613937
Replicate 30.69101491520866


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48842.p1 GENE.S_Transcript_48842~~S_Transcript_48842.p1 ORF type:internal len:146 (+),score=19.34,gag_pre-integrs|PF13976.2|2.6e-17 S_Transcript_48842:2-436(+)
GGTTCTCTTGTGTTGATGAAAGACTCTAGAGTTGGGTCTTTGTATGTCTTGCAAGGTTCTACCATCACCGGTTCTGCCGCCATTGCTTCCACATCCAATACCAATGAACCCAAACTTTGGCATATGCGTTTGGGACATATGGGTGAGAAAGGCATGGATATTCTCTGTAAGCATGGTTTGCTTGGCTCAACTAATAATTGTGAAATTGATTTTTGTGAGCATTGTGTATATGGCAAGCAAAAGAGAGTTAACTTCTCACCGGCAATTCATAGAACCAAAAATACTCTTGACTATGTCCACTCCGACTTGTGGGGCCCTTCACAAGTTGCCACCAGCACAGTTAATTGTTATATAATGACTATTATTGATGATTACTCACGCAAAGTTTGGGTGTATTTTTTAAGGCATAAAAATGAGGCCCTAGAAAAATTCAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48842.p1 GENE.S_Transcript_48842~~S_Transcript_48842.p1 ORF type:internal len:146 (+),score=19.34,gag_pre-integrs|PF13976.2|2.6e-17 S_Transcript_48842:2-436(+)
GSLVLMKDSRVGSLYVLQGSTITGSAAIASTSNTNEPKLWHMRLGHMGEKGMDILCKHGLLGSTNNCEIDFCEHCVYGKQKRVNFSPAIHRTKNTLDYVHSDLWGPSQVATSTVNCYIMTIIDDYSRKVWVYFLRHKNEALEKFK

Click here to download the sequence:
Link to NCBI Protein BLAST