Transcript Information: S_Transcript_48851.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0002
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.92223271607061
Replicate 20.32766519144824
Replicate 31.0956080841743
Condition 2: 8 Hour
Replicate 10.84456991354982
Replicate 20.22150345187848
Replicate 30.10552399804446
Condition 3: 24 Hour
Replicate 10.54071493788599
Replicate 20.67318252206972
Replicate 30.49944642386368


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_48851.p1 GENE.S_Transcript_48851~~S_Transcript_48851.p1 ORF type:internal len:202 (+),score=26.66 S_Transcript_48851:3-605(+)
GATTTGTTAGTAGCCGTTGATTCCCATGACAAGGCTAATACTCAATGGATCCTTGACTCGGGTTGTACTTTTCACATGTGTCCGTACCGTGACTGGTTTGACTCCTATGAGAGTGTTGATGGTGGCACCATTTGTATGGGTAACGGTGCTACATGTAAGGTTGTCGGGAAAGGAAATGTCAAAATTAAAGTCCATGATGGAACTACCCGTACACTTTTTGGGGTTAGACATGTTCCCGACCTTCATAAAAACCTTATTTCCTTAGGTACCCTTGATTCTTTGGGTTGTCGCTACTCCGCTCAAGGTGGAGTCCTGAAGGTATTTAAGGGTTCTTATATTTTGATGAAAGGTTCTAGAGTTGAGTCTTTGTATATTTTGCAAGGTTCTACATTCACAGGTTTCGCTACCGTTGCTTCCACATCAAGTTCCCAAGTGCAAGCATCTTCAAGCTCTCCTATTCCAACTACCCAACCTTCAATAGCTCGTTATAATAGGAAAAGAGCTCGCAAGGTACCGGAGAGATTAAAGGACTGTGATCGTGATAATGTGGCCTTTGCATTCACCGTTGAAGAGCGTGAAGTTGTTGATCTTCCTAAAGATAAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_48851.p1 GENE.S_Transcript_48851~~S_Transcript_48851.p1 ORF type:internal len:202 (+),score=26.66 S_Transcript_48851:3-605(+)
DLLVAVDSHDKANTQWILDSGCTFHMCPYRDWFDSYESVDGGTICMGNGATCKVVGKGNVKIKVHDGTTRTLFGVRHVPDLHKNLISLGTLDSLGCRYSAQGGVLKVFKGSYILMKGSRVESLYILQGSTFTGFATVASTSSSQVQASSSSPIPTTQPSIARYNRKRARKVPERLKDCDRDNVAFAFTVEEREVVDLPKDK

Click here to download the sequence:
Link to NCBI Protein BLAST