Transcript Information: S_Transcript_489120.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value8E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.19568383261162
Replicate 20.16222639380526
Replicate 30
Condition 2: 8 Hour
Replicate 10.15680434056715
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.16062414331319
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_489120.p1 GENE.S_Transcript_489120~~S_Transcript_489120.p1 ORF type:internal len:136 (+),score=26.57,UBN2_3|PF14244.2|1.1e-10 S_Transcript_489120:3-407(+)
AACAGTTCTTCTTCCTCTGCCTCAATGCAAGTTCCAACCCTTTCCATTAAACTCACCCATGAAAATTACTATCTATGGAGCAAAACCATGCTTCCTGCTCTTGAAGCATTCAATCTTGAATCTTTTGTCAAGTCAGACACAATTCCACCAACACATATCACACCTGCACCAACTATCGAAGCACCCAAACCTAGCCCTATTCCAAACCCACAATATGAAACATGGAAAAGGCAAGACAAGTTTGTTCTCTTGTGGCTAAAGTCACACATCTCTGAAAATGTTCTTGGTTATGTCATGGGATGTGAAACCTCTAGAACCACATGGGTTGCTCTTGAACAGCTCTTTGACGCTCAATCCACTGCCAAAGCTGATCACCTTAAGGACTCCCTTCAAGATCTCAAAAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_489120.p1 GENE.S_Transcript_489120~~S_Transcript_489120.p1 ORF type:internal len:136 (+),score=26.57,UBN2_3|PF14244.2|1.1e-10 S_Transcript_489120:3-407(+)
NSSSSSASMQVPTLSIKLTHENYYLWSKTMLPALEAFNLESFVKSDTIPPTHITPAPTIEAPKPSPIPNPQYETWKRQDKFVLLWLKSHISENVLGYVMGCETSRTTWVALEQLFDAQSTAKADHLKDSLQDLKK

Click here to download the sequence:
Link to NCBI Protein BLAST