Transcript Information: S_Transcript_489539.p1


Annotated TAIR IDATMG01250.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)
Annotated Gene Symbol(s)ORF102
Annotation TypeHomolog
Chromosome PositionchrM:310514-310882 | Forward length=122
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.33475473251799
Replicate 20.13875968275167
Replicate 30.34797615252077
Condition 2: 8 Hour
Replicate 10.26824390336016
Replicate 20
Replicate 30.5362477384901
Condition 3: 24 Hour
Replicate 10.13738920434336
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_489539.p1 GENE.S_Transcript_489539~~S_Transcript_489539.p1 ORF type:5prime_partial len:159 (+),score=23.38,RVT_1|PF00078.23|7.8e-25 S_Transcript_489539:1-477(+)
CATGAACTTACTCAGCATTATGCCAGAGCAATTATTTCTCTCAAAACCATAATGAAGCTGGACATTCAGAAGGCATATGATACAGTAAGCTGGAAGTATATTGAAGAAGTTCTAAGGAGTTTCAGGTTCCCAGAGGAGTTTATCGCCAAAATTCTTACCTGCAACACTACCTCCAGATTCTCAATGAATATTAATGGATGGCATAGGGGTTATTTTGAGGGAAAATGTGGTTTGAGGCAAGGAGACCCCCTCTCCCTCTATCTCTTTGTGCTAAGCATGGAAGGGCTCTCAAGGAAATTGAGAAGTCTTAAATTCAACCCTGACTTCTCTTTTCATTCTAAGTGTGTTAGAGTGGGGCTTACCCATCTTGCCTTTGCTGATGATCTCCTTATTTTCACAAGGCGGGATGTACCTTTAGTTAAAGTAGATGTGGAGTGTGTTAAAGAATTCTTTCATGTGTCAGAGTTATACATTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_489539.p1 GENE.S_Transcript_489539~~S_Transcript_489539.p1 ORF type:5prime_partial len:159 (+),score=23.38,RVT_1|PF00078.23|7.8e-25 S_Transcript_489539:1-477(+)
HELTQHYARAIISLKTIMKLDIQKAYDTVSWKYIEEVLRSFRFPEEFIAKILTCNTTSRFSMNINGWHRGYFEGKCGLRQGDPLSLYLFVLSMEGLSRKLRSLKFNPDFSFHSKCVRVGLTHLAFADDLLIFTRRDVPLVKVDVECVKEFFHVSELYI*

Click here to download the sequence:
Link to NCBI Protein BLAST