Transcript Information: S_Transcript_493020.p1


Annotated TAIR IDAT5G01980.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:375542-377023 | Forward length=493
E-Value3.7E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.57232260720818
Replicate 20.23723429631736
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.27120477854963


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_493020.p1 GENE.S_Transcript_493020~~S_Transcript_493020.p1 ORF type:5prime_partial len:93 (+),score=2.51,zf-RING_2|PF13639.2|3.4e-12,zf-rbx1|PF12678.3|1e-09,zf-ANAPC11|PF12861.3|1.2e-06,zf-C3HC4_2|PF13923.2|3.4e-07,zf-C3HC4|PF00097.21|4.3e-07,zf-RING_11|PF17123.1|1.4e-06,zf-RING_5|PF14634.2|2.3e-06 S_Transcript_493020:3-281(+)
GCCGTTTATAGCTGCTTAAGTATCCCAACATCGGAGTTGCAAGAGATTCCAATAACGACGACAATATTTCCAGCAGTTCCCACACCAAACGACGCCGTTTGCACCGTCTGCAGGGAGAGCTTTGACCCGCCACATCAGACAGGTAGGCAAATCCCTTGTGGACACGTGTACCATGCCCACTGTATTGCCACGTGGCTCTCCGTTGGTGATTCTTGCCCTCTTTGTAGACTTGCTGTCGTTGACCTTAACATTAAGGCATGTCATGAAAAAACTTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_493020.p1 GENE.S_Transcript_493020~~S_Transcript_493020.p1 ORF type:5prime_partial len:93 (+),score=2.51,zf-RING_2|PF13639.2|3.4e-12,zf-rbx1|PF12678.3|1e-09,zf-ANAPC11|PF12861.3|1.2e-06,zf-C3HC4_2|PF13923.2|3.4e-07,zf-C3HC4|PF00097.21|4.3e-07,zf-RING_11|PF17123.1|1.4e-06,zf-RING_5|PF14634.2|2.3e-06 S_Transcript_493020:3-281(+)
AVYSCLSIPTSELQEIPITTTIFPAVPTPNDAVCTVCRESFDPPHQTGRQIPCGHVYHAHCIATWLSVGDSCPLCRLAVVDLNIKACHEKTC*

Click here to download the sequence:
Link to NCBI Protein BLAST