Transcript Information: S_Transcript_493098.p1


Annotated TAIR IDAT5G06550.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2001246-2003068 | Reverse length=502
E-Value4E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.77262994010275
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_493098.p1 GENE.S_Transcript_493098~~S_Transcript_493098.p1 ORF type:internal len:88 (+),score=-5.88,JmjC|PF02373.18|1.8e-12,Cupin_8|PF13621.2|1.4e-09 S_Transcript_493098:1-261(+)
GCCTGGAACGCGCTGCTGCACGGCCACAAGCGCTGGGCGCTCTTTCCGCCGGGCACGCCGCGCGAGGTGGTGCTGCCTAAGGAGCCAGGGCTAGAGCGCGAGTCCATCTCATGGTTCTCGCGCATCTGGCCGCGCTCACAAGGCCAGGCGTGGCCAGAGGCGCGGCCGCTCAATGCAATCCAGCGGCCCGGTGACGTCATCTTTGTGCCTGCAGGGTGGTGGCATGCCGTGCTGAATCTGGACCTCACAGTGGCGGTGACA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_493098.p1 GENE.S_Transcript_493098~~S_Transcript_493098.p1 ORF type:internal len:88 (+),score=-5.88,JmjC|PF02373.18|1.8e-12,Cupin_8|PF13621.2|1.4e-09 S_Transcript_493098:1-261(+)
AWNALLHGHKRWALFPPGTPREVVLPKEPGLERESISWFSRIWPRSQGQAWPEARPLNAIQRPGDVIFVPAGWWHAVLNLDLTVAVT

Click here to download the sequence:
Link to NCBI Protein BLAST