Transcript Information: S_Transcript_494117.p1


Annotated TAIR IDAT1G42470.1
Annotated Gene NamePatched family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:15926987-15935128 | Forward length=1272
E-Value6E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.35840992129635
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20.19045219812057
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_494117.p1 GENE.S_Transcript_494117~~S_Transcript_494117.p1 ORF type:internal len:119 (+),score=9.93,Sterol-sensing|PF12349.4|2.3e-17,Sterol-sensing|PF12349.4|9.7e+02,Patched|PF02460.14|9.8e-17 S_Transcript_494117:2-355(+)
GGCGCCTTCGCCATTGGGTCGAACACCTCGCTGCCCGCCCTTGCCTCATTCAGCGTCTATGCGGCGCTGGCGGTGCTCTTCGACCTGCTGCTGCAGGTCACCTTCTTCACAGCCATCATGGCCATCAACAAGCGGCGCGAGCTGTCACGGCGCTGGGAGTGCTGCTGCTGCAAGAAGTCAGACCGAGCGCTGGAAGAGCAAAAGGGCAGGTGCTGCAAGGAGCGGCCCAGTGAGGCACTCATGCGCACTTTTGGCGGCATGCTGGTCAAGCGACCGGTGCAGGCTGCAGTACTGATTGCCTGGGCTGCGCTCCTGGCAGTGGGCATCTGGGGCACACTGCAGATGAGCGTCGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_494117.p1 GENE.S_Transcript_494117~~S_Transcript_494117.p1 ORF type:internal len:119 (+),score=9.93,Sterol-sensing|PF12349.4|2.3e-17,Sterol-sensing|PF12349.4|9.7e+02,Patched|PF02460.14|9.8e-17 S_Transcript_494117:2-355(+)
GAFAIGSNTSLPALASFSVYAALAVLFDLLLQVTFFTAIMAINKRRELSRRWECCCCKKSDRALEEQKGRCCKERPSEALMRTFGGMLVKRPVQAAVLIAWAALLAVGIWGTLQMSVE

Click here to download the sequence:
Link to NCBI Protein BLAST