Transcript Information: S_Transcript_49463.p1


Annotated TAIR IDAT2G15790.1
Annotated Gene Namepeptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase
Annotated Gene Symbol(s)SQN, CYP40
Annotation TypeOrtholog
Chromosome Positionchr2:6878144-6880743 | Reverse length=361
E-Value2.1E-218
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.101003277658
Replicate 28.1668889522292
Replicate 39.3232616113229
Condition 2: 8 Hour
Replicate 111.192884420595
Replicate 213.348948359616
Replicate 311.482293599368
Condition 3: 24 Hour
Replicate 18.931057338696
Replicate 28.4519739304058
Replicate 310.938842462992


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_49463.p1 GENE.S_Transcript_49463~~S_Transcript_49463.p1 ORF type:complete len:362 (+),score=96.76,Pro_isomerase|PF00160.17|7e-51,TPR_11|PF13414.2|8.4e-08,TPR_11|PF13414.2|5.8e-07,TPR_1|PF00515.24|0.0016,TPR_1|PF00515.24|1.4e+02,TPR_1|PF00515.24|1.3e-08,TPR_2|PF07719.13|0.003,TPR_2|PF07719.13|3.4e+03,TPR_2|PF07719.13|5.5e-08,TPR_8|PF13181.2|12,TPR_8|PF13181.2|1.7e-08,TPR_7|PF13176.2|0.99,TPR_7|PF13176.2|0.002,TPR_14|PF13428.2|2.3e+03,TPR_14|PF13428.2|1.3e-05,TPR_16|PF13432.2|4e+02,TPR_16|PF13432.2|0.00013 S_Transcript_49463:177-1262(+)
ATGGCAAGACCCAGATGCTATCTTGACGTAAGCATTGGAGGAGAGCTTGAAGGAAGGATTGTAGTTGAGCTCTATAACGACGTCGTTCCTAAAACTGCTGAAAATTTCCGAGCTTTATGTACTGGTGAGAAGGGTGTTGGCCCTAATACTGGGGTCCCTCTTCACTACAAGGGATGTGGTTTTCATCGCGTTATTAAGAGCTTTATGATCCAAGGAGGGGACATTTCTGCTGGAGATGGTACTGGAGGTGAATCAATATATGGGTTGAAGTTCGAGGATGAGAACTTTGAGTTGAAACATGAAAGGAAGGGAATGTTATCGATGGCTAATAGCGGGCCTAATACCAATGGATCGCAGTTTTTCATCACTACTACTAGGACTTCTCATCTAGATGGGAAGCATGTTGTTTTTGGTCGGGTGATCAAAGGCATGGGAGTTGTTCGTTCTATCGAGCATGTCAATGCCGATAGCAATGATCGGCCCACCCAGGAAGTATTCATTGCTGATTGTGGTGAAATTCCTGAGGGGGCTGATGATGGCATTGCAAATTTCTTCAAGGATGGTGACAACTATGCTGATTGGCCAGCTGATCTTGATGAGAGTCCAAATGAACTCTCTTGGTGGACGGATGCTGTTGATTCAATTAAGGTGCTTGGAAACGAGCATTTCAAGAAACAAGACTATAAAATGGCTCTGAAGAAGTACAGGAAAGCATTGCGCTACTTGGATATTTCCTGGGAGAAAGATGGGATTGATGAAGAGAAAAGTGCATCGTTGAGGAAGATCAAGTCACAGATTTTCACAAACAGTTCTGCCTGTAAACTGAAGCTGGGGGACTTAAAAGGCGCTTTGTTGGACTGTGAATTTGCAATGCGTGATGGTGATAATAATGTCAAAGCTTTGTTCCGCCAGGGACAGGCTCATATGGCTCTCAATGACATAGATGCCGCAGTTGAAAGTTTCAAGAAAGCGTTAGAACTGGAACCTAATGATGCTGGAATAAAAAGGGAGCTTGCAATTGCGAAGAAGAAGAATGCTGATAGACGTGATCAGGAGAGAAAAGCTTACTCTAAGATGTTCCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_49463.p1 GENE.S_Transcript_49463~~S_Transcript_49463.p1 ORF type:complete len:362 (+),score=96.76,Pro_isomerase|PF00160.17|7e-51,TPR_11|PF13414.2|8.4e-08,TPR_11|PF13414.2|5.8e-07,TPR_1|PF00515.24|0.0016,TPR_1|PF00515.24|1.4e+02,TPR_1|PF00515.24|1.3e-08,TPR_2|PF07719.13|0.003,TPR_2|PF07719.13|3.4e+03,TPR_2|PF07719.13|5.5e-08,TPR_8|PF13181.2|12,TPR_8|PF13181.2|1.7e-08,TPR_7|PF13176.2|0.99,TPR_7|PF13176.2|0.002,TPR_14|PF13428.2|2.3e+03,TPR_14|PF13428.2|1.3e-05,TPR_16|PF13432.2|4e+02,TPR_16|PF13432.2|0.00013 S_Transcript_49463:177-1262(+)
MARPRCYLDVSIGGELEGRIVVELYNDVVPKTAENFRALCTGEKGVGPNTGVPLHYKGCGFHRVIKSFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVIKGMGVVRSIEHVNADSNDRPTQEVFIADCGEIPEGADDGIANFFKDGDNYADWPADLDESPNELSWWTDAVDSIKVLGNEHFKKQDYKMALKKYRKALRYLDISWEKDGIDEEKSASLRKIKSQIFTNSSACKLKLGDLKGALLDCEFAMRDGDNNVKALFRQGQAHMALNDIDAAVESFKKALELEPNDAGIKRELAIAKKKNADRRDQERKAYSKMFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST