Transcript Information: S_Transcript_49731.p1


Annotated TAIR IDAT2G25170.1
Annotated Gene Namechromatin remodeling factor CHD3 (PICKLE)
Annotated Gene Symbol(s)PKL, GYM, CHD3, CHR6, SSL2
Annotation TypeOrtholog
Chromosome Positionchr2:10714411-10723763 | Forward length=1384
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.757763206149
Replicate 223.534686092934
Replicate 324.647034808673
Condition 2: 8 Hour
Replicate 129.316736014398
Replicate 229.008777476778
Replicate 328.123605889042
Condition 3: 24 Hour
Replicate 128.340984400856
Replicate 224.497505344767
Replicate 326.743601377745


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_49731.p1 GENE.S_Transcript_49731~~S_Transcript_49731.p1 ORF type:complete len:1409 (+),score=357.47,SNF2_N|PF00176.19|7.7e-67,DUF1086|PF06461.7|7.8e-57,Chromo|PF00385.20|1.7e-09,Chromo|PF00385.20|6e-16,Chromo|PF00385.20|7.5e+03,DUF1087|PF06465.9|3.7e-22,Helicase_C|PF00271.27|1.1e-20,ResIII|PF04851.11|2.1e-11,ResIII|PF04851.11|2e+03,HDA2-3|PF11496.4|6.2e-10,PHD|PF00628.25|2.9e-08,CHDCT2|PF08074.7|2e-07,CHDCT2|PF08074.7|2.4e+03,CHDCT2|PF08074.7|2.4e+03 S_Transcript_49731:248-4474(+)
ATGAGTAGTTTGGTGGAGAGGCTGCGACAAAGGTCAGATCGAAGACCTATATATAACATTGATATATCAGACGATGAAGCAGATTTCGTGCATGGCAAGTCTGGGACTGCTTCAGAGAAACTTGAACGTGTAGTCAGAGAAAATGCGAAAGATGATTTATGCCAGTCCTGTGGAGAAGGTGGAACTCTGCTTGAGTGTGATACTTGTACTTATGCTTATCATCCAAAGTGCTTACTTCCACCTCTTAAAGCACCTTTTCCTGCTAGCTGGAGGTGTCCTGAATGCGTTAACCCTCTCAGTGAAATTGAGAAAATCCTCGATTGTGAAATGCGCCCAACTGCTGCTGCTGATGAGAATGCTTCCAAGCTAGGATCTAAGCAATTATTTGTGAAACAATATCTTGTTAAGTGGAAGGGGTTGTCTTACCTGCACTGTTCCTGGATTCCTGAGAAACAGTTCGAAAGTGCCTATAGAGCTCTTCCTCGCCTCAAGACCAAAGTCACAAATTTCAATCGGTCAATGGCAGCAATTAATAATCCAGAAGATGAATATGTCGCTATACGTCCCGAATGGACTACCGTTGATCGGATCCTTGCTTGCAGAGGAGATGATGATGAAAAGATGTATTTTGTTAAGTGGAAGGAACTACCATATGATGAGTGCTCTTGGGAATCAGAGTCAGATATATCTGCTTTTCAGCCTGAAATCGAAAGGTTTCACCGAATCTCCAAACGTCGGAAACATTCGTCTAGTAAGCTGAAAAACAGTTCTCATGATACAGCAGAACTTCAAAAGAAACATAAAGAATTCCAACAGTATGAACACAGTCCTGAATTTCTAACTGGAGGTTCATTGCATCCTTATCAACTTGAAGGGCTGAACTTTTTGCGCTTTTCATGGTCTAAACAAACACATGTGATACTTGCTGATGAAATGGGTCTTGGCAAGACTATCCAAAGTATTGCTTTCCTGGCATCTCTTTTTGAAGAGGGAGTTTATCCCCATTTAGTAGTAGCACCATTGTCAACATTGCGTAATTGGGAGCGTGAATTCGCAACTTGGGCACCACAAATGAATGTTGTCATGTATGTTGGTTCGTCAGCAGGACGTGCTACGATAAGGGATTATGAATTTTACTATCCTAAAAAAGCTGTGTCTACAAAGCCCAAGAAAAAAAAATCTGGTCAGATTACCAGTGATAGCAAACAAGACAGGATCAAGTTTGATGTTCTGCTGACCTCGTATGAAATGATCAATTTAGATTCTAATTCTTTGAAGCCAATTAAATGGGAATGCATGGTTGTCGATGAAGGTCACCGGCTCAAGAATAAGGATTCGAAGCTATTTCTTCAGTTGAAGCAGTACTCAAGTAAACATCGTGTTCTTTTAACAGGAACACCTCTTCAGAACAATCTTGATGAGCTTTTCATGCTGATGCACTTTCTTGATGCTGGGAAGTTTGGCAGTTTGGAGGAGTTCCAAGAGGAGTTCAAGGATATCAACCAAGAGGAGCAGATCTCAAGGCTTCACAAGATGTTGGCTCCTCATCTTCTTAGAAGAGTGAAGAAAGATGTGATGACAGAGCTGCCACCTAAGAAGGAACTTATCTTGCGTGTTGAGTTAAGTAGTAAGCAAAAGGAGTACTATAAGGCAATATTGACGAGAAATTATGAGCTGCTAACGCGCAAGGGTGGTGCACAGATTTCTCTTATCAATGTGGTGATGGAGTTGCGAAAGCTGTGTTGTCATCCATATATGTTAGAGGGTGTTGAACCGATGATACCAGATTCAACTGAGGCCTTCAAGCTGCTTCTTGAATCTTCTGGAAAATTGCAGTTGTTGGACAAAATGATGGTGAAGCTCAAGGAGCAAGGACACAGAGTTCTTATATATTCACAGTTTCAAAACATGCTAGACATATTGGAAGATTACTTGACATATAAGAAATGGAATTATGAACGGATTGATGGCAAGGTCAGTGGAGCTGAGAGACAAATTCGTATTGATAGATTCAATGCAAAGAATTCTTCCAGATTTTGCTTCTTGCTATCTACAAGAGCGGGTGGTTTGGGGATAAACCTTGCGACAGCTGACACAGTTATCATCTACGACAGTGACTGGAATCCACACGCAGATTTGCAAGCAATGGCTAGAGCTCATCGACTGGGACAGACTAATAAGGTCATGATTTACAGACTAATAACTAGAGGATCAATTGAAGAAAGAATGATGCAGATGACTAAGAAGAAAATGGTTTTAGAGCATCTAGTTGTTGGAAAGCTGAAGACACAGAATATCAATCAGGAAGAGCTAGACGACATCATAAGGTATGGTTCAAAAGAGCTATTTGTGGATGAAACTGAAGAGGCCAAGGCTCGCCAGATTCACTATGATGATGCTGCAATAGATAGATTACTTGATCGTGAACGGATAGGAGATGAAGAGACTACCTTAGATGAAGAAGAGGACAATGAGTTTCTGAAAGCATTCAAGGTGGCAAATTTTGAATATGTGGACGAAGCTGAAGCAGTTGCTGAGGAAGAGGCAGCAAAAGCAGCTGCAGAGAGCAAAACCACTGTCAGTGGTTCTGACAGAACCTCATATTGGGAAGATCTATTAAGAGATAAATATGAAGTGCACAAAGTGGAAGAATTTAATTCCTTGGGAAAGGGAAAGCGTAGCCGGAAACAGATGGTATCTGTTGAAGATGATGACTTGGCTGGTCTAGAAGATGTTAGTTCTGATGGTGAAGATGACAACTATGAGGCCGAGTTGACTGACAGCGAAACAACATCTGGAGCACCTTCTGGTAGAAGACCTTATAGAAAGAGAGCACGAGTTGATGGTATGGAATCACTTCCTCTGATGGAAGGTGAAGGGAAATCATTTAGAGTACTGGGTTTTAATCAGGGTCAACGGGCTGCGTTTGTACAAGTTTTGATGAGATTTGGTGTGGGGGAGTTTGATTGGGCCGAATTTGTGCCCCGGTTGAAGCAGAAGACTTACGAGGAGATCAGAGATTATGGAATACTTTTCTTGTCTCATCTTGCTGAGGAGATTACTGACTCACCAACCTTTTCTGATGGTGTTCCAAAGGAAGGGCTTAGAGTTCAAGATGTTCTCGTCAGAATAGCTGTGTTGATGTTGATCAGGGACAAGGTGAAGTCTGCATCCGAGAGGTCTGGTGATTCTCTCTTTGCAGATGATGTAGTATTCCGTTATCCCACTTTAAAAGGTGGAAGGATTTGGAAGAGAGAGCATGATTTGATACTACTACGAGCAGTTTTGAAGCATGGGTATGGAAGATGGCAAGCCATTCTCGATGACAAGGACTTGCGGATTCAAGATGTTATTTGTCAGGAATTGAACCTCCCCATGATAAGCCTTGCTGCAATTGCAGCCAATCAGGCTCAAAGTGGATCACATATGGCAAACTTAGATTCATCTGGCGACCCACTAAAGGGCACTAGCAGTGAGAATGGTCCAGCAGAGGCAACAGCAGGGTCGACTGACACTGCTACTTTATTATATCAATTTAGAGAAATGCAGAGAAGACAAGTTGAGTTCATCAAGAAGAGGGTGCTGCTTTTGGAGAAAGGTCTTAATGCTGAGTACCAGAAAGAATACTTTGGTGAGGGACAGTCTAATGGTGTCTGTGGTGTAGAACCTGAAATTACAAATAAAGCAGCGGACGTGACAGCTATGACTTCTGTGGACCTTGCTGTAGGACCATTGGACAAGCCTCCCCACAATAAAGTGCTTGCTGCAGAAGAAGTTTCTTCTGCCAGTTATGATGCCGACCCTAGAAGGCAGGTACTAGCGCAGCACTATGATGAGATATGCAAAGTATTAGCTGAAGATGAAAAAGAAACTGTCAAAGCTTATCTTTCAAATGAAGCTGATCCTAGTTTGGGCAAGCGACTAAGTCAGCTAGAAACTATTTTTGAAAAGGTAAATCAAATTCTTTCGTCACCACAGAGTCATCCTAGTCTCCATGAACCCACATCAAAGGACGAGAAACAGGAGACTGGAGATCGGATTGGTGGACAAAGAACTAGTGTGCCCTCTGATTCAACTCCTGCTTTAAAGTCAGAGAACATGATGGAGGTTGAAGCGACGGAAAAAAATGGCCAAACTGAAGGCAAATCTGGAGATGTGATGGCAGAAGCAGATGTTGATGTGAAGAAATCAGAAGAGAAATCTGGTGTAGTTGTATTGGATGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_49731.p1 GENE.S_Transcript_49731~~S_Transcript_49731.p1 ORF type:complete len:1409 (+),score=357.47,SNF2_N|PF00176.19|7.7e-67,DUF1086|PF06461.7|7.8e-57,Chromo|PF00385.20|1.7e-09,Chromo|PF00385.20|6e-16,Chromo|PF00385.20|7.5e+03,DUF1087|PF06465.9|3.7e-22,Helicase_C|PF00271.27|1.1e-20,ResIII|PF04851.11|2.1e-11,ResIII|PF04851.11|2e+03,HDA2-3|PF11496.4|6.2e-10,PHD|PF00628.25|2.9e-08,CHDCT2|PF08074.7|2e-07,CHDCT2|PF08074.7|2.4e+03,CHDCT2|PF08074.7|2.4e+03 S_Transcript_49731:248-4474(+)
MSSLVERLRQRSDRRPIYNIDISDDEADFVHGKSGTASEKLERVVRENAKDDLCQSCGEGGTLLECDTCTYAYHPKCLLPPLKAPFPASWRCPECVNPLSEIEKILDCEMRPTAAADENASKLGSKQLFVKQYLVKWKGLSYLHCSWIPEKQFESAYRALPRLKTKVTNFNRSMAAINNPEDEYVAIRPEWTTVDRILACRGDDDEKMYFVKWKELPYDECSWESESDISAFQPEIERFHRISKRRKHSSSKLKNSSHDTAELQKKHKEFQQYEHSPEFLTGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGVYPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSAGRATIRDYEFYYPKKAVSTKPKKKKSGQITSDSKQDRIKFDVLLTSYEMINLDSNSLKPIKWECMVVDEGHRLKNKDSKLFLQLKQYSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSSKQKEYYKAILTRNYELLTRKGGAQISLINVVMELRKLCCHPYMLEGVEPMIPDSTEAFKLLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQNMLDILEDYLTYKKWNYERIDGKVSGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGSIEERMMQMTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFVDETEEAKARQIHYDDAAIDRLLDRERIGDEETTLDEEEDNEFLKAFKVANFEYVDEAEAVAEEEAAKAAAESKTTVSGSDRTSYWEDLLRDKYEVHKVEEFNSLGKGKRSRKQMVSVEDDDLAGLEDVSSDGEDDNYEAELTDSETTSGAPSGRRPYRKRARVDGMESLPLMEGEGKSFRVLGFNQGQRAAFVQVLMRFGVGEFDWAEFVPRLKQKTYEEIRDYGILFLSHLAEEITDSPTFSDGVPKEGLRVQDVLVRIAVLMLIRDKVKSASERSGDSLFADDVVFRYPTLKGGRIWKREHDLILLRAVLKHGYGRWQAILDDKDLRIQDVICQELNLPMISLAAIAANQAQSGSHMANLDSSGDPLKGTSSENGPAEATAGSTDTATLLYQFREMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGEGQSNGVCGVEPEITNKAADVTAMTSVDLAVGPLDKPPHNKVLAAEEVSSASYDADPRRQVLAQHYDEICKVLAEDEKETVKAYLSNEADPSLGKRLSQLETIFEKVNQILSSPQSHPSLHEPTSKDEKQETGDRIGGQRTSVPSDSTPALKSENMMEVEATEKNGQTEGKSGDVMAEADVDVKKSEEKSGVVVLDD*

Click here to download the sequence:
Link to NCBI Protein BLAST