Transcript Information: S_Transcript_49770.p1


Annotated TAIR IDAT2G05170.1
Annotated Gene Namevacuolar protein sorting 11
Annotated Gene Symbol(s)ATVPS11, VPS11
Annotation TypeOrtholog
Chromosome Positionchr2:1870020-1873278 | Forward length=932
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.0093004302521
Replicate 27.1767730984571
Replicate 38.0118496732536
Condition 2: 8 Hour
Replicate 110.875277748297
Replicate 210.681207902493
Replicate 310.288866629897
Condition 3: 24 Hour
Replicate 18.022779875874
Replicate 27.4436233194089
Replicate 37.0399410406725


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_49770.p1 GENE.S_Transcript_49770~~S_Transcript_49770.p1 ORF type:complete len:953 (+),score=215.39,Clathrin|PF00637.16|7.8e-15,Clathrin|PF00637.16|9,Clathrin|PF00637.16|0.0076,VPS11_C|PF12451.4|1.2e-14,zf-C3H2C3|PF17122.1|1e-06 S_Transcript_49770:356-3214(+)
ATGTACCAGTGGAGGAAATTTGAGTTCTTTGAGGAGAAGTATGGGGGCAAATGCAAAGTACCTGAAGAAATCACAAAAGCAGATATTAACTGCTGTTCAAGTGGTAGAGGAAAAGTAGCCGTTGGATGTGATGATGGAACAGTTGGTATCCTTGATCGAGGTTTCAAGTTCAATTATTCCTTTCAGGCTCATTCTTCTTCTGTTCTCTTCCTTCAACTGCTCAAGCAAAGGAATTACCTTCTTACTGTTGGAAAAGATGAACAAATATCTCCACAGGCATCAGCTATGTGCTTGAAGGTTTTTGACTTAGATAAAACACAAGCCGAGGAAACAAGCACAAGCACAAGCACGACAATTCCTGATTGTGTCCAGATATTGAGAATATTCACTAACCAGTTCCCTGAAGCAAAGATCACATCATTTCTTGTTCTGGAGGAAGCTCCACCAGTACTATTAATAGCCATTGGGTTGGACAATGGCAGCATTTACTGCATCAAAGGAGACATTGCTCGTGAGCGTATTACACGCTTCACCCTTAAAGTGGAAAATGCTTCAGCAGGCAATGCTGCCATTACTGGGCTTGGGTTCAGAAGTGATGGTCCTGCCCTTCAACTCTTTGCTGTGACTCCGTCTTCAGTTAGTTTGTTCAATCTCCAACAACAACCACCAAAAAGGCAAACCTTGGATCATATTGGCTGTAGTGGAAAAAGTATTGCAATGAGTGACCGCTTGGAGCTAATAATCGGTCGACCTGAAGCTGTGTATTTCTACGAAGGTGATGGGCGTGGCCCTTGTTGGGCGTTTGAAGGAGAGAAGAAATTTGTTGGGTGGTTTCGTGGATACCTTTTGTGCGTGATTGCTGATCAAAGAAGTGGGAGGAACACATTCAATATTTATGACCTGAAGAACCGTTTGATAGCTCATAGTGTTGTGGTCAATGAAGTTTCACACATGGTTTGTGAATGGGGCAACATAATTCTGATTTTGGGTGATAATTCAGCCCTTTGTGTTGGAGAGAAAGACATGGAGAGCAAATTAGATGTTCTTTTCAAGAAGAATCTCTATTCTGTAGCTATCAATCTTGTTCAAACTCAGCAAGCAGATGCTGCTGCAACTGCAGAAGTGCTAAGAAAATATGGCGATCATCTATACAGCAAGCAGGACTATGATGAGGCTATGGCCCAATACATTCACACTATTGGTCACCTTGAACCTTCATATGTGATACAGAAATTCCTGGATGCTCAGAGAATCCACAACCTGACCAATTACTTGGAGAAATTGCATGAGAAGGGACTTGCGTCAAAAGATCATACCACTCTCTTATTGAACTGCTACACAAAGTTAAAGGATGTGGAAAAGTTAAATTATTTCATCAAAGGTGAGGATGGTGGGGAGCATAAGTTTGATGTTGAGACTGTCATACGAGTATGTCGTGCTGCGAATTACCATGAACACGCAATGTATGTTGCTAAAAAAGCTGGTAGACATGAGTTGTACCTTAAGATTTTGCTTGAAGATCTGGCTAGATATGATGAAGCCCTACATTATATTTCAAGCCTTGAGCCAAGCCAAGCTGGAGTCACGGTAAAAGAATATGGAAAAATTCTCATCGAGCACAAGCCATGGGAGTCCATACAAATACTCCTACGGCTATGCACTGAGGATGGTAAGCCCGCCAAAAAGGGGAGCCTGACTATGTTGCCATCTCCTGTTGATTTCCTGAACATCTTTGTACATCATCCACAAGCCCTGATGGATTTTCTTGAGAAATACACTGATAAGGTCAAGGACTCACCTGCCCAGGTGGAAATTCACAATACCCTGTTGGAATTGTATTTGTCTCATGATTTAACCTTCCCATCGGTGTCACAGTATAGTTCTAATGGTTCTCTCGATGATAATGGAAGTTTGTCATCTGGAGCTGCAGTAATTTCAAAACCATCATCAAATGGTAAGTCTTCAAAAGATGATGATGAGAGGGGTCGTCTTCTTAGACGTGATAAGGGATTACGCTTGCTTAAAAGTGCATGGCCATCTGACCAGGAAAATCCACTTTATGATGTTGATCTTGTTATTATCCTATGTGAAATGAATGCATTTAAGGAAGGGCTCTTGTTTCTCTATGAGAGAATGAAACTGTACAAGGAGGTCATCGCCTGCTACATGCAGGCACGTGACCATGAAGGATTGATTGCATGCTGCAAGAAGCTTGGAGATTCAGGTAAGGGTGGAGACGCCACTCTTTGGGCAGACCTACTGAAATACTTTGGGGAACTTGGAGAAGATTGTTCAAAGGAGGTTAAAGAAGTTTTGACATATATTGAGAGGGATGACATTTTGCCTCCCATCATTGTTCTTCAAACATTGTCCCAAAATCCATGCCTCACTCTATCTGTAATTAAGGATTACATTGCTCGGAAACTTGAACAGGAATCAAAGCTGATTGAAGAAGATAGGCGGGCTATCGAGAAGTATCAGGAGGACACATCAGCAATGAGAAAAGAAATTGAGGATCTGCGGACAAATGCAAGAATCTTTCAGCTCAGCAAGTGCACTGCATGCACTTTCACCCTTGATCTTCCAGCAGTCCACTTTATGTGCATGCATTCATATCATCTACGATGTCTTGGTGACAATGAAAAGGAATGCCCTGAGTGTGCTCCTGATTACAGGTCCATCCTAGAAATGAAGAGAAATTTGGAGCAGAATTCTAGAGATCAGAATCAGTTCTTCCAGAAAGTGAAGAACTCAAAAGATGGATTCTCTGTGATTGCTGATTATTTTGGCAAGGGCATAATCAGCAAGACAAGACCTGACGGGGCTGGAAACAATGCCTCTGGCAGTGGATTTGGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_49770.p1 GENE.S_Transcript_49770~~S_Transcript_49770.p1 ORF type:complete len:953 (+),score=215.39,Clathrin|PF00637.16|7.8e-15,Clathrin|PF00637.16|9,Clathrin|PF00637.16|0.0076,VPS11_C|PF12451.4|1.2e-14,zf-C3H2C3|PF17122.1|1e-06 S_Transcript_49770:356-3214(+)
MYQWRKFEFFEEKYGGKCKVPEEITKADINCCSSGRGKVAVGCDDGTVGILDRGFKFNYSFQAHSSSVLFLQLLKQRNYLLTVGKDEQISPQASAMCLKVFDLDKTQAEETSTSTSTTIPDCVQILRIFTNQFPEAKITSFLVLEEAPPVLLIAIGLDNGSIYCIKGDIARERITRFTLKVENASAGNAAITGLGFRSDGPALQLFAVTPSSVSLFNLQQQPPKRQTLDHIGCSGKSIAMSDRLELIIGRPEAVYFYEGDGRGPCWAFEGEKKFVGWFRGYLLCVIADQRSGRNTFNIYDLKNRLIAHSVVVNEVSHMVCEWGNIILILGDNSALCVGEKDMESKLDVLFKKNLYSVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIHNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNYFIKGEDGGEHKFDVETVIRVCRAANYHEHAMYVAKKAGRHELYLKILLEDLARYDEALHYISSLEPSQAGVTVKEYGKILIEHKPWESIQILLRLCTEDGKPAKKGSLTMLPSPVDFLNIFVHHPQALMDFLEKYTDKVKDSPAQVEIHNTLLELYLSHDLTFPSVSQYSSNGSLDDNGSLSSGAAVISKPSSNGKSSKDDDERGRLLRRDKGLRLLKSAWPSDQENPLYDVDLVIILCEMNAFKEGLLFLYERMKLYKEVIACYMQARDHEGLIACCKKLGDSGKGGDATLWADLLKYFGELGEDCSKEVKEVLTYIERDDILPPIIVLQTLSQNPCLTLSVIKDYIARKLEQESKLIEEDRRAIEKYQEDTSAMRKEIEDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSYHLRCLGDNEKECPECAPDYRSILEMKRNLEQNSRDQNQFFQKVKNSKDGFSVIADYFGKGIISKTRPDGAGNNASGSGFG*

Click here to download the sequence:
Link to NCBI Protein BLAST