Transcript Information: S_Transcript_49813.p1


Annotated TAIR IDAT1G51580.1
Annotated Gene NameRNA-binding KH domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:19125612-19128102 | Forward length=621
E-Value7E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6929873776288
Replicate 25.4588345296944
Replicate 36.8447267939136
Condition 2: 8 Hour
Replicate 16.0458580795996
Replicate 25.1893463339572
Replicate 36.8672189449038
Condition 3: 24 Hour
Replicate 14.5604009348921
Replicate 24.672950840484
Replicate 35.3954373340841


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_49813.p1 GENE.S_Transcript_49813~~S_Transcript_49813.p1 ORF type:3prime_partial len:388 (+),score=100.72,KH_1|PF00013.25|7.5e-14,KH_1|PF00013.25|4.1e-13,KH_1|PF00013.25|5.9e-11,KH_3|PF13014.2|3.9e-12,KH_3|PF13014.2|5.8e-10,KH_3|PF13014.2|6.8e-08,KH_2|PF07650.13|0.065,KH_2|PF07650.13|0.0012,KH_2|PF07650.13|0.036,KH_4|PF13083.2|2.9,KH_4|PF13083.2|3,KH_4|PF13083.2|0.014,KH_5|PF13184.2|0.13,KH_5|PF13184.2|3.2,KH_5|PF13184.2|1.1 S_Transcript_49813:341-1501(+)
ATGTCATCTTTAACACCTTCTAAGAGACACCATAATAGAAACTCTAAGGAGTCAAATGGGAAAAAGCTTCAAAAATCAGCTAGCCGTGAATCACAAAAACAGCCTAAGAAAAACTCGTTGGGGAGTGCTGTTTTTCGTGTACTTTATCCGTTCTCAAAAATTGGAAGTGTAATTGGAAAAGGGGGTAATATCATATCACAAATACGGCAAGAAACCGGTGCTAAGGTCAGAGTTGATGATCCTGTTCCTGGATGTGATGAGAGGGTGATCTTTATTATGGGTCCTGACAAGAATGCTGAGAGCATCAATGAACAAATGAAAGGTGACAATGGGAACTCTAATTCAGAAGATCACAATGAGATTAATGTGGAGAAGGAAGCTCTTCTAAATGCTGAAGATACACATCCTGATAAAGCAAAATCCTCTATTCAGAAGGCTTTGTTACTTGTCTTTGAAAAATTTCTTGAAGGAGAAGAGGAGACTAAAGGTAGTAATGAAGAAAATAATGGATCTGTAACAGTCAATTTGAGGTTGCTTGTGCTTTCCAGTCAAGTGGGCAGCCTTTTGGGGAAAGGCGGCTCTGCCATCAAACAAATGTCTGCTAAAAGTGGTGCCCAGATTCAAGTTCTTCCAAGAGACAATCTCCCTCAGTGTGCCTCCTCTGCTGACGAAGTTATCCAGATCAGTGGTGTAGCAGATGCCGTAAAGGAAGCAATCAAGTCTGTTTCAGGTGAGATTATGGAAAATCCACCTTGTGATCATGATTCAGTTCCTTCGAATCCCTCTGGATCCTCATCTCATTCACACAGCCATCCTGTTCCAAGGCTCGAGTCCAACTCCTTCAGATCCTTGCCCCCTCAGCGGGCTTCTTTTAGTGGTGGATTTCGTGATAGTGGCGATTTTCATTCAAGTGTTCCTCCATTGTTTCCCAATTTCCGTGAGAACTTCAAACCTACTCGAATGGATGTTTCTGATGCCTTAACCTTTCGGTTAATTTGCCCTGATGAGAGGGTAGGTGGTGTCATTGGGAAAGGTGGGACTATAGTGAAGTCTCTCCAGCATGAAACAGGGTGTGAGATTAAAGTTCTTGAAGGCACTTCTGATGGAGAGGAACGTATAATAGCTGTGTCTGGCCCAGCGCACCCAGATGATAGGATCTCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_49813.p1 GENE.S_Transcript_49813~~S_Transcript_49813.p1 ORF type:3prime_partial len:388 (+),score=100.72,KH_1|PF00013.25|7.5e-14,KH_1|PF00013.25|4.1e-13,KH_1|PF00013.25|5.9e-11,KH_3|PF13014.2|3.9e-12,KH_3|PF13014.2|5.8e-10,KH_3|PF13014.2|6.8e-08,KH_2|PF07650.13|0.065,KH_2|PF07650.13|0.0012,KH_2|PF07650.13|0.036,KH_4|PF13083.2|2.9,KH_4|PF13083.2|3,KH_4|PF13083.2|0.014,KH_5|PF13184.2|0.13,KH_5|PF13184.2|3.2,KH_5|PF13184.2|1.1 S_Transcript_49813:341-1501(+)
MSSLTPSKRHHNRNSKESNGKKLQKSASRESQKQPKKNSLGSAVFRVLYPFSKIGSVIGKGGNIISQIRQETGAKVRVDDPVPGCDERVIFIMGPDKNAESINEQMKGDNGNSNSEDHNEINVEKEALLNAEDTHPDKAKSSIQKALLLVFEKFLEGEEETKGSNEENNGSVTVNLRLLVLSSQVGSLLGKGGSAIKQMSAKSGAQIQVLPRDNLPQCASSADEVIQISGVADAVKEAIKSVSGEIMENPPCDHDSVPSNPSGSSSHSHSHPVPRLESNSFRSLPPQRASFSGGFRDSGDFHSSVPPLFPNFRENFKPTRMDVSDALTFRLICPDERVGGVIGKGGTIVKSLQHETGCEIKVLEGTSDGEERIIAVSGPAHPDDRIS

Click here to download the sequence:
Link to NCBI Protein BLAST