Transcript Information: S_Transcript_49897.p1


Annotated TAIR IDAT1G53260.1
Annotated Gene NameLOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT3G15000.1); Has 32763 Blast hits to 18534 proteins in 929 species: Archae - 22; Bacteria - 2420; Metazoa - 15140; Fungi - 5401; Plants - 5313; Viruses - 485; Other Eukaryotes - 3982 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19859393-19860421 | Reverse length=271
E-Value3.6E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.286893195347
Replicate 28.1422199557495
Replicate 39.0749971205019
Condition 2: 8 Hour
Replicate 110.324196899564
Replicate 29.4103807770279
Replicate 38.8816031687422
Condition 3: 24 Hour
Replicate 19.9688952437235
Replicate 211.152034267726
Replicate 35.7049862344906


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_49897.p1 GENE.S_Transcript_49897~~S_Transcript_49897.p1 ORF type:complete len:252 (+),score=34.32 S_Transcript_49897:157-912(+)
ATGGCGTACTTGACAGCCCGACGAACCCTAGCAACCGTTCTCAATCGAACTCTTCCTAACTCCTCTTCTTCATTCTCCCTTTCTCGATCCCAATTCGCTTTTACCATCCTCAACCACCATCTCCACCCCCAACTCGATCCCAACTCAGCGATTCCAGCTCGGTTCAAAACTTCCGGGTCGGGTTACTCCCCTCTAAGCGACACGTCACCGAACTGGAGCAATAGACCACCTAAAGAAACGATCTTATTGGATGGCTGTGATTATGAACATTGGCTTATTGTTATGGAGTACCCTAACGAACCTAAACCCTCCCCTGATGAAATGGTTGATTCTTATGTTAAAACCCTAGCTGAAGTTGTTGGCAGTGAGGATGAGGCGAGGAAGAAGATTTATTCAGTTTCGACTACGACATATACTGGGTTTGGGGCTTTGATTCCAGAGGAGCTTTCTTATAAAGTTAAAGGGTTGCCTGGTGTTCTTTGGGTCTTGCCTGATTCTTATCTTGATGTGCCAAGTAAAGATTATGGAGGTGATCTGTTCGTTGATGGCAAGGTCATTCGTAGACCACAGTATGACTTTAGCGACAGGCAGCCAAGTAGAAGTAGACCTCGGCCAAGGCATGACAGGCGTCGTGACAGGGTGCAGAGTGTGCCAAGAGGACCAATGCAGACACAGATGCAGCATTGGAACCAAGACCAGGCTCAGAATGTGCAGCAACCAATATCAATGAATAACCAAACTGCAGCTACGAGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_49897.p1 GENE.S_Transcript_49897~~S_Transcript_49897.p1 ORF type:complete len:252 (+),score=34.32 S_Transcript_49897:157-912(+)
MAYLTARRTLATVLNRTLPNSSSSFSLSRSQFAFTILNHHLHPQLDPNSAIPARFKTSGSGYSPLSDTSPNWSNRPPKETILLDGCDYEHWLIVMEYPNEPKPSPDEMVDSYVKTLAEVVGSEDEARKKIYSVSTTTYTGFGALIPEELSYKVKGLPGVLWVLPDSYLDVPSKDYGGDLFVDGKVIRRPQYDFSDRQPSRSRPRPRHDRRRDRVQSVPRGPMQTQMQHWNQDQAQNVQQPISMNNQTAATS*

Click here to download the sequence:
Link to NCBI Protein BLAST