Transcript Information: S_Transcript_49913.p1


Annotated TAIR IDAT3G12810.1
Annotated Gene NameSNF2 domain-containing protein / helicase domain-containing protein
Annotated Gene Symbol(s)PIE1, SRCAP, chr13
Annotation TypeOrtholog
Chromosome Positionchr3:4065636-4073992 | Forward length=2055
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.5600778257758
Replicate 28.5043559939536
Replicate 38.511353572776
Condition 2: 8 Hour
Replicate 110.626999861527
Replicate 210.474433198609
Replicate 310.275645330378
Condition 3: 24 Hour
Replicate 110.478440048334
Replicate 28.7360268438718
Replicate 38.1419799012211


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_49913.p1 GENE.S_Transcript_49913~~S_Transcript_49913.p1 ORF type:complete len:2091 (+),score=553.82,SNF2_N|PF00176.19|1.2e-68,Helicase_C|PF00271.27|5.5e-22,HSA|PF07529.9|4.2e-16,ResIII|PF04851.11|4.4e-09,ResIII|PF04851.11|1.8e+03,DEAD|PF00270.25|87,DEAD|PF00270.25|2.1e-05 S_Transcript_49913:269-6541(+)
ATGGCCTCGAAAGGTCCTAGGTCTAAACTTGATCACGACACTCGCGCTCGCCGTCAAAAGGCACTTGAAGCCCCTCGAGAACCCCGGCGCCCCAAAACACATTGGGATCATGTTCTGGAAGAGATGATTTGGTTATCGAAGGACTTTGAGGCAGAGAGGAAATGGAAGTTAGCACAGGCTAAGAAGGTTGCTTTACGAGCTAGCAAGGGCATGCTGGATCAGGCTACAAGAGGAGAAAAGCGATTGAAGGAAGAAGAACAGCGGATGAGAAAAATTGCACTCAATATTTCAAAAGACGTGAAAAAATTCTGGACAAAAATAGAAAAGCTGGTGCTTTACAAGCATCAACTAGAGCTTGATGATAAAAAGAAGAAGGCTCTGGACAAACAGTTGGAGTATCTTTTAGGTCAAACTGAAAGGTATTCAACTATGCTAGCTGAAAATCTCTTGGGCACATCAACATCCTGTGCATCAATACAGCCATGTATACAGGATACAGTTGACACTCAGCAGAAAGAGAGAAATAAAGTTGCAGATGACGGACCCACAGATTTACTTGCTGAAGCTAAATCAGACACAGAGATCTTAGCTGATGCAGTTGATGGTGATGATGATTGCAGTGTAGAATTTGAGGATGAATCGGAAGATGATGAGCAGACTATTGAGGAGGATGAAGCTCTGATAACTGAAGAAGAAAGGCAGGAGGAATTGGCTGCCCTGCAGAATGAAGTAGACTTACCACTAGATGAGCTACTCAAACGCTACTCTATGAGTGATGTCGATGGAGAACTTTGTCCAGAGGGACGAGATGTTGCCTTAGAGTCATATGAAGAAGATGTTAATCCTAGGCAAATTAAAGGAGAAAAGGGCCCAGAACAACATGTTGCAGAGAAGAGCTCTGATACCCCTGAAGAGGCTGACCCTAAATGTGGAATCGATTTGCAGGTGCCCAAAGAGCATAGTGGCTGTTCGCCTGAGATTTCCACTGCCGGTTCTGGAAAAAGCAATGGTCTTCTGGAGACAGAGAGCAATGTAACTATAACTGAGACCTACCACCCCAAAAATATATCTGTTAGAGCAGCTGATCCTGAATTTTTGAATATGGATTATGACTTTGATGATGAGCAGGGAGACGATGAGTTTGTTGCTGCTGTAGGGGAAGAAAAGGATGATGAGACAACATTGGATGAGGAGGAGGAATTGGCAAAAAGGGAGTCAGGAGATCATGAGGATGAGCTTGCATTATTGAAGAAGGAAAGTGAAATTCCTCTGGAAGATTTGCTTTCAAAATATAGCAAGGATTTTGCTGATAGCGGTTCTGCAGATGATGAATCAGATTATGCATCTGCTCACTCTGATATAGGGTCTCTCCCAGAAGATGAACTGCCTGAACAGGAAAAACAAAAATTGGTTTTGGCTGGAGATGATCTCTCTTCTGAGGTAAAAGTGACTTCACCTTCTTACAAAGAAGAAGCTGTGGCTGGACATGAGATCGGTTCTGAAGAAGATAGTGAAAGAGATGCTAGAATTGCTGATGCAGCTGCGGCTGCAAGGTCTGCACAGCCGACAGGGAACACTTTTTCCACAACTAATGTGCGCACAAAGTTCCCTTTTCTTATTAAGTACCCGCTTCGTGAGTATCAGCATATTGGACTTGACTGGCTAGTGACAATGTATGAGAAGAGACTCAATGGGATCCTTGCTGATGAAATGGGACTGGGAAAGACAATCATGACAATCGCATTGCTTGCCCACCTGGCGTGTGAAAAGGGAATATGGGGGCCTCATCTCATTGTGGTACCAACTAGTGTCATGCTTAATTGGGAAACTGAGTTTCTCAAGTGGTGCCCTGCATTCAAAATTTTAACTTACTTTGGAAGTGCCAAGGAGCGTAAATATAAGAGGCAAGGTTGGATGAAACCGAATTCTTTCCATGTTTGCATAACAACTTACAGGCTTGTTATTCAGGATTCAAAAATTTTTAAACGGAAGAAGTGGAAATATTTGATTTTAGATGAGGCCCATCTGATAAAGAACTGGAAATCTCAGAGGTGGCAAACTCTTCTAAACTTCAATTCTAAGCGGCGCATCTTGTTGACTGGTACACCATTGCAGAATGATCTGATGGAGTTGTGGTCTTTAATGCATTTCCTGATGCCCCATGTCTTTCAGTCTCACCAGGAGTTTAAGGACTGGTTTTGTAACCCAATATCAGGCATGGTCGAAGGTCAAGAAAAAGTAAACAAAGAAGTGGTTGATCGCTTGCATAATGTCCTACGGCCTTTTATTCTCCGCCGGTTGAAAAGAGATGTTGAGACACAGCTACCTATGAAACATGAGCATGTGATATACTGTAGACTCTCGAAGAGGCAGAGGAATCTCTATGAAGATTTCATTGCAAGCTCAGAAACTCAAGCTACTCTTGCTAGTGCCAATTTCATTGGTATGTTAAATGTTATAATGCAGCTTCGTAAAGTTTGCAATCATCCTGACTTATTTGAGGGGCGTCCGATTATAAGTTCTTTCGACATGGAGGGGATTGAGATGCAGTTAAGCTCTAACATTTGCTCTATACTTCCAACTGGTCCATACTCTTCCGTAAATCTTTCTGGTCTGGGATTTCTGTTTACAAATTTGGATTTCAGCATGACTTCTTGGGAGAGTGATGAAATCCAGTCTATTGCTACTCCCTCGAGATTGATTGAGTGTCGCACTAGTCTTAATAATTTGGAGCTCACCAGGCCTGGATTCAAATATGGGAAACAATGTCTTGGGACAAATATCTTTGAAGATATTCGAAAAGCAATTTTTGAGGAGAGACTCGATGAGGCAAAACAGCGAGCAGCTGCTATTGCATGGTGGAATTCATTGAGATGTCAAAAGAAGCCTGTATACTCAACAAGTCTGCGTGAGCTACTGACTATCAAGCATCCAGTCTATGACATGCAGTGCCACAAGGCAAACCGTCTCTCTTATGATTATTCCTCAAAGCTTGCAGACATAGTTTTGTCACCTGTGGAGCGATTCCAGGATATGAAAGATCAAGTTGAATGTTTCATGTTTGCTATTCCAGCAGCACGAGCTTCCCCTCCTGTCTGTTGGTGCAGTAAATCTGGGACCTCGGCTTTCATTGATCCACTCTACAAAGATAAATGTTCTGAGATCTTGTTGCCTCTTTTGACTCCTATTCGGCCTGCTATTGTTCGGAGGCAATTATATTTTCCTGACAGGCGTTTGATACAGTTTGATTGTGGCAAGCTTCAACAGCTTGCTAATTTGCTCAGGAGATTGAAATCAGAGGGTCATAGAGCTTTGATATTTACTCAGATGACTAAGATGCTTGACATCTTGGAAGCTTTCATAAATTTGTATGGCTATACCTATGTGCGATTGGATGGATCAACTCAACCAGAGGAGAGGCAAACTTTAATGCAACGATTCAATACAAACCCAAAGATATTTTTGTTTATCTTGTCTACTCGCAGTGGTGGTGTTGGTATCAACCTTGTTGGAGCAGATACTGTGATATTTTATGACAGTGACTGGAATCCTGCCATGGACCAACAAGCTCAAGACCGTTGTCATCGCATTGGACAGACACGAGAAGTCCATATATATCGTCTAATAAGTGAGAGCACCATAGAAGAGAACATCTTGAAGAAAGCAAATCAGAAGCGAGCTCTTGATGACCTCGTAATACAGAGTGGTGGGTACAACACTGAATTTTTCAAGAAGCTTGACCCAATGGAGCTGTTCTCTGGTCACAGAATAGCTCCCATCAAGCAGGTGCAGAAAGAGAGAATTTCAGATGATGGGGTTGAGGTTCCTGTGTCTAATGCTGATATTGAGGCTGCTCTCCGAAGTGCTGAAGATGAAGCAGATTATATGGCTTTAAAGAAGGTTGAACAAGAAGAGGCTGTGGAGAACCAAGAATTTACAGAGGAAGCCATTGGGAAGTTGGAAGATGAAGAACTGGCGAATGAGGATATTACGAAAGCCGAAGAGTCTAGGGATCAAACTGCCTTAACCATAGCTTCAAACGCATTGAGTGTGGCAGCTGCAAATGGGAATGATGCAGAGGGAGAGAAGGCTTTTACTTTAGCTGGTGATGAAGATGATCTTGATATGTTAGCTGATGTAAAACAAATTGCTGCTGCAGCGGCTGCTTCTGGGCAAGCAGCATTATCCTTTGAGAATCGATTACGCCCAATAGATAGGTATGCCATGCGTTTCTTGGAGCTTTGGGACCCTATCATCAATAAGGACGCGATGGAATATCAGGTTCAGTTTGAGGAGAGAGAGTGGGAGCTGGAGCGTATTGAGAAGTTAAAAGAGGATATGGAGGCTGAGATTGATGATGATGACGAGCCTCTTGTGTATGAGAAATGGGATGCTGAGTTTGCTACCCAAGCATATCACCAGCAAGTGGAGGCTTTGGTGCAACATCAGTTGATGGAAGAACTGGAAAACAAGGCAAAGGAAAAGGAAAGGGAAAACGGTGAGCATGTTGATAGTGATATTATCAAGACTGAAGCATCTAGTGGCAGTAAACTAAAACCAAAAAAGAAGAAACAAAAGAAAGCCAAGTTCAGATCTCTGAAAAAGGAATCTCTGGCTGCTGCATCCAAAGCGTTGAAAGAGGAGGAAGTTTTGGACGAGCAGTCATCAGACTATGATGATAGTTTGCTAGAGACAGAAGCCTGCACAGACGTAGTCATGTTGCAAAGAAAACGGAAGAAGGATGAAAATACTACTACTGAAGAGATGATTTCGAAAGTCAAATCCAAGAAAGCAAAGAAGACAGCTCTTGTAATGAAACTGCCAGCCACAGAATCAAATTTGTTGAGTGTTCTACATGAAGAATCTAAAGATCCAAGGCCATATGAGGATGGAGGAACTGATCTAGATTTTAGGCCAGCTAGCCGGGGCAAGTTGGGAGGCAAAATCTCAATTGCTATCTTGCCAATGAAAAGGATCTATACAATAAAGCCGGAAAAGTTGAAGAAAAAAGGGAACATATGGTCGAGTGATTGTTTTCCCTCACCTGATTCCTGGTTACCACAGGAGGATGCAGTTTTATGTGCTCTTGTTCACGAGTATGGCCCGAATTGGAGCTTGGTTAGTGACACTCTATATGGAATCACAGCTGGTGGTCATTACCGGGGAAGATTTCGTCATCCTGTCCTCTGCTGTGAAAGATTTAGGGAACTTGTCCAAAAATATGTTCACTCTGTGGCTGATACACTTAATAGTGAAAAGGCAAGCACTACTGGTCCAACAAAAGGTCTACTGAAAGTCTCCGAGGATAACATACGAATCTTGTTAGATGCTGCCATGGAACAGCCAGATCGTGAATTACTTCTTCAAAGGCACTTCACTTCCCTGCTAACTTCTGCTTGGAGGGTGACATCTTGCCGTGACCAGCAACAAAACCAAACTATTCCCCAGAGCAATAACTATCCTAGCATTAGACTCTTTGGTACATCAGTGAATCCAAATTCCCAGAATTCAACCGGAGGACCACCACAGAGAAGTTTCAATTTGCGTCAGTTTAGTAAGTTGATAACTACTGCTTTGGATGATGTTGAGACCATGGACCAGAACAACACAACCTTCCAATCTAACCAGATGGAAGATGAGTCACCCACTACCGAGAAGTTGGATGTGACGCTGGAGTTAGGAAGAGATGGAGGTGAAACAGGTGACTCTAGTGCTGGCTTACCATCCATCATACCATTGTCAATACCCAGCTTAGACCCACCACTACCTCTGAACATGCCTTCAGAAGAGAACCAGCTTAGGTCCTCTCAACAACTAGCTGAAATGCGTTTCAGGGCTTCCTCAGATGCATGTCTTAGTGATGTTCTTTGTTGGGCCTCATCTGTGTTTCCCATAGTTGAGACCAAATCCCGTTCTTCATTTAAATCACCCTCACTGGGAAAACACAAGCTTACTTCGGCTGAAACCAGTAGGTCTTCTAAATCGAAGATGAGAAAAATGACAGCAGAGACTGCTGAGGACCATCTTTCATTTGCAGACCCACTGTTGCAGTTGCTGCCTGCAGTTATACCTAATGATCCTAGTTGTTCTGTTCCATATCTATCTCCAGATGCTTCTTTTGAGGATCTTCCATTTGACACTCCTAATGGCATGGATGAGGAACTTCCTCGCCAGCCAAATGGTCTTGAGCGGGTTTCCCATTTCTACAACCCTAGTTTTATCTCTGGCCTTGATGACTGCTCTTCTCTGCCTGAGCATGTTGATATTGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_49913.p1 GENE.S_Transcript_49913~~S_Transcript_49913.p1 ORF type:complete len:2091 (+),score=553.82,SNF2_N|PF00176.19|1.2e-68,Helicase_C|PF00271.27|5.5e-22,HSA|PF07529.9|4.2e-16,ResIII|PF04851.11|4.4e-09,ResIII|PF04851.11|1.8e+03,DEAD|PF00270.25|87,DEAD|PF00270.25|2.1e-05 S_Transcript_49913:269-6541(+)
MASKGPRSKLDHDTRARRQKALEAPREPRRPKTHWDHVLEEMIWLSKDFEAERKWKLAQAKKVALRASKGMLDQATRGEKRLKEEEQRMRKIALNISKDVKKFWTKIEKLVLYKHQLELDDKKKKALDKQLEYLLGQTERYSTMLAENLLGTSTSCASIQPCIQDTVDTQQKERNKVADDGPTDLLAEAKSDTEILADAVDGDDDCSVEFEDESEDDEQTIEEDEALITEEERQEELAALQNEVDLPLDELLKRYSMSDVDGELCPEGRDVALESYEEDVNPRQIKGEKGPEQHVAEKSSDTPEEADPKCGIDLQVPKEHSGCSPEISTAGSGKSNGLLETESNVTITETYHPKNISVRAADPEFLNMDYDFDDEQGDDEFVAAVGEEKDDETTLDEEEELAKRESGDHEDELALLKKESEIPLEDLLSKYSKDFADSGSADDESDYASAHSDIGSLPEDELPEQEKQKLVLAGDDLSSEVKVTSPSYKEEAVAGHEIGSEEDSERDARIADAAAAARSAQPTGNTFSTTNVRTKFPFLIKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKYKRQGWMKPNSFHVCITTYRLVIQDSKIFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFCNPISGMVEGQEKVNKEVVDRLHNVLRPFILRRLKRDVETQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFIGMLNVIMQLRKVCNHPDLFEGRPIISSFDMEGIEMQLSSNICSILPTGPYSSVNLSGLGFLFTNLDFSMTSWESDEIQSIATPSRLIECRTSLNNLELTRPGFKYGKQCLGTNIFEDIRKAIFEERLDEAKQRAAAIAWWNSLRCQKKPVYSTSLRELLTIKHPVYDMQCHKANRLSYDYSSKLADIVLSPVERFQDMKDQVECFMFAIPAARASPPVCWCSKSGTSAFIDPLYKDKCSEILLPLLTPIRPAIVRRQLYFPDRRLIQFDCGKLQQLANLLRRLKSEGHRALIFTQMTKMLDILEAFINLYGYTYVRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRIAPIKQVQKERISDDGVEVPVSNADIEAALRSAEDEADYMALKKVEQEEAVENQEFTEEAIGKLEDEELANEDITKAEESRDQTALTIASNALSVAAANGNDAEGEKAFTLAGDEDDLDMLADVKQIAAAAAASGQAALSFENRLRPIDRYAMRFLELWDPIINKDAMEYQVQFEEREWELERIEKLKEDMEAEIDDDDEPLVYEKWDAEFATQAYHQQVEALVQHQLMEELENKAKEKERENGEHVDSDIIKTEASSGSKLKPKKKKQKKAKFRSLKKESLAAASKALKEEEVLDEQSSDYDDSLLETEACTDVVMLQRKRKKDENTTTEEMISKVKSKKAKKTALVMKLPATESNLLSVLHEESKDPRPYEDGGTDLDFRPASRGKLGGKISIAILPMKRIYTIKPEKLKKKGNIWSSDCFPSPDSWLPQEDAVLCALVHEYGPNWSLVSDTLYGITAGGHYRGRFRHPVLCCERFRELVQKYVHSVADTLNSEKASTTGPTKGLLKVSEDNIRILLDAAMEQPDRELLLQRHFTSLLTSAWRVTSCRDQQQNQTIPQSNNYPSIRLFGTSVNPNSQNSTGGPPQRSFNLRQFSKLITTALDDVETMDQNNTTFQSNQMEDESPTTEKLDVTLELGRDGGETGDSSAGLPSIIPLSIPSLDPPLPLNMPSEENQLRSSQQLAEMRFRASSDACLSDVLCWASSVFPIVETKSRSSFKSPSLGKHKLTSAETSRSSKSKMRKMTAETAEDHLSFADPLLQLLPAVIPNDPSCSVPYLSPDASFEDLPFDTPNGMDEELPRQPNGLERVSHFYNPSFISGLDDCSSLPEHVDIG*

Click here to download the sequence:
Link to NCBI Protein BLAST