Transcript Information: S_Transcript_49996.p1


Annotated TAIR IDAT3G57790.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:21405387-21407088 | Reverse length=490
E-Value5.6E-237
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.747403952986
Replicate 213.163513097341
Replicate 312.320987551649
Condition 2: 8 Hour
Replicate 115.501229096067
Replicate 214.569901425032
Replicate 314.777793507655
Condition 3: 24 Hour
Replicate 111.977971829927
Replicate 29.8082882032092
Replicate 39.9086603020099


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_49996.p1 GENE.S_Transcript_49996~~S_Transcript_49996.p1 ORF type:complete len:476 (+),score=30.25,Glyco_hydro_28|PF00295.13|3.7e-24,Pectate_lyase_3|PF12708.3|6.7e-15,Pectate_lyase_3|PF12708.3|30,Pectate_lyase_3|PF12708.3|1.1e+03,Beta_helix|PF13229.2|0.00028,Beta_helix|PF13229.2|1.1,Beta_helix|PF13229.2|2.8e+03 S_Transcript_49996:400-1827(+)
ATGGCAATTTTCTCTCTCCCCTCTATCCTCCAATTCACCACTCTCCTCTCTCTCCTCCAAATCCCTCCCACCCAATCACGCTTCGCCACGTCAACCGGCCCCACACTCCAACTCCCTACAGCCACCACGACCACCTACTCAGTGAAAGACTTCGGAGCAACAGGCAACGGCCGCCACTACGACACAACCCCCATCCGATCAGCGATCGACGCGTGTCCATCGCCACACCCCTGCCACGTGGTCTTCCCGCCAGGGAAATACTTAACGGCGACAATCCACCTCAGATCCGGCGTCGTTTTGGTAATACAAGAAGGGGCGGTGATATTAGGGGGGACAAGATTAAAGGATTACCCTGTAGAAGCGGAGAGATGGTACGTTGTGGTGGGGGAGCATGTGGATAACGTGGGGATCAGAGGAGGAGGGGAGATTAACGGTCAGGGATTGGAGTTTGTGAAGAGGTTTGATGAGAAGAAGGATGTGATGGTGAGTTGGAATGAGACGGGTGCATGTTATGGGGATGAGTGTAGGCCAAGGTTGGTGGGGTTTATTGGGTGTACAAATGTTAGTGTTCACAATGTCAAGCTCAATCAGCCTGCCTATTGGTGCTTGCACATAGTCGACTGTGATCACACTTCCATTCATGACGTATCAATCTATGGGGACTTCAATTCACCAAATAACGATGGGATTGACATACAGGATTCTAATAATACAGTCATCACAAGGTGCCACATTGACACTGGGGATGATGCTATATGTCCTAAGACATACAATGGTCCTCTCTACAACTTAACGGCTACAGATTGTTGGATTAGAACAAAGTCTTCTGCTATCAAACTTGGAAGCGCTAGCTCCTTCGATTTTGTACATTTGTTGTTTGACAACATTACTATCTTTGAATCTCACAGAGGACTCGGACTTCAAATACGCGATGGAGGAAATGTCGATGACATTACATTCTCGAACATAAACATCAGCACTCGGTACTACCATCCATCATGGTGGGGGAGAGCAGAACCTATCTATGTAACAACCTGTCCACGACACTCAGATTCAAAAGAAGGGTCGATCTCTAACTTGAGGTTCATCAACATCACATCAGTTTCTGAGAACGGAGTGTTCTTGTCAGGTTCGAAAGGTGGACTTATAAGCAATTTGAAATTCAGCCATGTAAATCTCACTTACAGAAGGTGGACAAATTATGTTGGAGGGTTGGTAGATTACAGGCCCGGATGCTCAGGGCTTGTTGAGCATAATATGGCTGGGATCATCATGGAACATGTTGAAAGTTTTGAAGTTGTTAATGTGGACTTGAGATGGTCTCAGGAAAAATCAGTAGGATGGGATAACCCCTTGGATTTCAGACCTTCTACTGTAAACAACATATCTTTTCTTAATTTTCATTCAGGATTGTATAACACCCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_49996.p1 GENE.S_Transcript_49996~~S_Transcript_49996.p1 ORF type:complete len:476 (+),score=30.25,Glyco_hydro_28|PF00295.13|3.7e-24,Pectate_lyase_3|PF12708.3|6.7e-15,Pectate_lyase_3|PF12708.3|30,Pectate_lyase_3|PF12708.3|1.1e+03,Beta_helix|PF13229.2|0.00028,Beta_helix|PF13229.2|1.1,Beta_helix|PF13229.2|2.8e+03 S_Transcript_49996:400-1827(+)
MAIFSLPSILQFTTLLSLLQIPPTQSRFATSTGPTLQLPTATTTTYSVKDFGATGNGRHYDTTPIRSAIDACPSPHPCHVVFPPGKYLTATIHLRSGVVLVIQEGAVILGGTRLKDYPVEAERWYVVVGEHVDNVGIRGGGEINGQGLEFVKRFDEKKDVMVSWNETGACYGDECRPRLVGFIGCTNVSVHNVKLNQPAYWCLHIVDCDHTSIHDVSIYGDFNSPNNDGIDIQDSNNTVITRCHIDTGDDAICPKTYNGPLYNLTATDCWIRTKSSAIKLGSASSFDFVHLLFDNITIFESHRGLGLQIRDGGNVDDITFSNINISTRYYHPSWWGRAEPIYVTTCPRHSDSKEGSISNLRFINITSVSENGVFLSGSKGGLISNLKFSHVNLTYRRWTNYVGGLVDYRPGCSGLVEHNMAGIIMEHVESFEVVNVDLRWSQEKSVGWDNPLDFRPSTVNNISFLNFHSGLYNTQ*

Click here to download the sequence:
Link to NCBI Protein BLAST