Transcript Information: S_Transcript_500689.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value2.2E-46
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.62618826435719
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_500689.p1 GENE.S_Transcript_500689~~S_Transcript_500689.p1 ORF type:internal len:85 (+),score=-0.58,AAA|PF00004.25|1.2e-28,RuvB_N|PF05496.8|4.3e-07,AAA_16|PF13191.2|0.00016,AAA_16|PF13191.2|19,IstB_IS21|PF01695.13|1.5e-06,IstB_IS21|PF01695.13|2.4e+03,AAA_5|PF07728.10|7.6e-06,AAA_22|PF13401.2|0.0014,AAA_22|PF13401.2|5.8,AAA_17|PF13207.2|8.9e-06,TIP49|PF06068.9|3.3e-05,TIP49|PF06068.9|2.7e+02 S_Transcript_500689:1-252(+)
TGGAAGGGTATTTTGTTGTACGGCCCGCCGGGAACGGGTAAGAGTTACTTGGCCAAGGCGGTCGCGACGGAGGCGAACAGTACATTCTTCAGTGTCAGCAGTTCCGACTTGGTGAGCAAATGGATGGGTGAGAGTGAACGACTCGTCAAGGCTCTCTTCAGCATGGCAAGGGAAAACAAGCCCTCAGTCCTCTTCATCGACGAAATCGATGCCCTCTGCGGACCCCGCGGCGAAGGCGAGTCCGAAGCCTCG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_500689.p1 GENE.S_Transcript_500689~~S_Transcript_500689.p1 ORF type:internal len:85 (+),score=-0.58,AAA|PF00004.25|1.2e-28,RuvB_N|PF05496.8|4.3e-07,AAA_16|PF13191.2|0.00016,AAA_16|PF13191.2|19,IstB_IS21|PF01695.13|1.5e-06,IstB_IS21|PF01695.13|2.4e+03,AAA_5|PF07728.10|7.6e-06,AAA_22|PF13401.2|0.0014,AAA_22|PF13401.2|5.8,AAA_17|PF13207.2|8.9e-06,TIP49|PF06068.9|3.3e-05,TIP49|PF06068.9|2.7e+02 S_Transcript_500689:1-252(+)
WKGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESERLVKALFSMARENKPSVLFIDEIDALCGPRGEGESEAS

Click here to download the sequence:
Link to NCBI Protein BLAST