Transcript Information: S_Transcript_502054.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.7588984795453
Replicate 24.6743198215074
Replicate 33.4384762189764
Condition 2: 8 Hour
Replicate 14.0964026597883
Replicate 24.8661930657032
Replicate 34.0945695964371
Condition 3: 24 Hour
Replicate 13.2088529421212
Replicate 22.176750264395
Replicate 33.2774407984049


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_502054.p1 GENE.S_Transcript_502054~~S_Transcript_502054.p1 ORF type:complete len:354 (+),score=67.80,UBN2_3|PF14244.2|1.1e-34 S_Transcript_502054:452-1513(+)
ATGTCTTCAGGAAGAAATACAACCTTCCATTTTCAAGATTTGCAGAATCCACTTTTTGTTCATCCGTCTGATGGTCCTAATTCTGTCACTGTAAGTAACAAGTTAACTGGTACAAGCAATTATAGAGCATGGAGAAGGTCTATGGAGCTCAATCTATCTACCAAAAGGAAAACGGGTTTTGTCAATGGTACTATGGTTAAGTCTACATCTGATGTAGTTCAAGCAGAACAATGGGAAACTTGCAACAACTTGGTAATCTCTTGGTTACTTAACTCTGTGTCTGATTCCATTACTCAATCTGTGTTTTATATGGTCATAGTTAAAGAAATCTGTAAAAATTTGGAGACTAGATTCAATGTTTGTAGTGGTGCTCGAATGTACAAGTTACATAGAGATTCTTATGAGCTGAAGCAATTAGGAACTACAATCAGTGAATATTATACCAAGTCTAAATCTGTATGGGAGGAACTAGATGTCTTGACACAATATCCTATTATTACTGATGTTAATGCTGAAATTGTGGCTTTTATTGAACATCTACATAGACAAGAAGAAGAAGCTCATTTGTTTGAAATTCTGTATCATTTGGATGAAATTTATGGACATCAGAAAAGTAATATTCTTGTCATGAACCCTTCACCAAATGTTGAAGCTGCATGTGCTATTTTAGAAGAGGAAGAATCTCATAAGGATATTCTTGACTCTAGTTCATTTTCAACTAAATCAACAACATTATTGAGCAAGAATCCTAAGATCATTTGTGGGAAAGGTGGAAACAAGGGACATGACAAAAATAGATGTTGGCAGCTCATTGGTTATCCAGCTTGGCATCCTCTAGCAAAGAAATTTCCTCAAAGAAAGTTTATTAACTCAACTCAAAGGTTTAATAATGGTGTTTCTAACTCATGGGGAGTGTCAAGAGATCATTCTCCAGGGGGAGTTCATAGAGGTGGTTATAAAGGAAATTTTAAAGGCGGTAAACCAAGGGAAGCTTATAATGCTGAATTGGTGAATTCATCTTCACCTTCTTCTTCAGGAATGATTGCCTTCACTGATGAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_502054.p1 GENE.S_Transcript_502054~~S_Transcript_502054.p1 ORF type:complete len:354 (+),score=67.80,UBN2_3|PF14244.2|1.1e-34 S_Transcript_502054:452-1513(+)
MSSGRNTTFHFQDLQNPLFVHPSDGPNSVTVSNKLTGTSNYRAWRRSMELNLSTKRKTGFVNGTMVKSTSDVVQAEQWETCNNLVISWLLNSVSDSITQSVFYMVIVKEICKNLETRFNVCSGARMYKLHRDSYELKQLGTTISEYYTKSKSVWEELDVLTQYPIITDVNAEIVAFIEHLHRQEEEAHLFEILYHLDEIYGHQKSNILVMNPSPNVEAACAILEEEESHKDILDSSSFSTKSTTLLSKNPKIICGKGGNKGHDKNRCWQLIGYPAWHPLAKKFPQRKFINSTQRFNNGVSNSWGVSRDHSPGGVHRGGYKGNFKGGKPREAYNAELVNSSSPSSSGMIAFTDE*

Click here to download the sequence:
Link to NCBI Protein BLAST