Transcript Information: S_Transcript_50326.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2005865218878
Replicate 20.82942817885394
Replicate 30.92444792399
Condition 2: 8 Hour
Replicate 10.69481221584644
Replicate 21.2896053100594
Replicate 31.6026953086452
Condition 3: 24 Hour
Replicate 10.93073438431103
Replicate 20.85202299159201
Replicate 31.074623445832


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50326.p1 GENE.S_Transcript_50326~~S_Transcript_50326.p1 ORF type:complete len:399 (+),score=85.25,UBN2_3|PF14244.2|4.9e-43,UBN2_3|PF14244.2|3e+03,Retrotrans_gag|PF03732.13|3e-10 S_Transcript_50326:587-1783(+)
ATGTCAGGTTCTTCAAGTTCTGAGACAGTATCTTCTGCAATTGATGTTCACAGCGAACTGTATATTCATCACTCTGACGTTTCCAATTCGTTTCTTCTTGCTACACAAAAACTGAATGGCGACAATTATGGTGAATGGAGGAGATCAGCAAAAATTACTCTCAGTGCCAAAAACAAGCTAGGTTTCGTGATAGGGACTTGCAAAAAGCCAGCTGATGGGTCTTCTACCTTAAGCTACTGGGAAATGTGCAATAATATGGTAATTTCTTGGATTTTACATTCAGTTGAATCTGATATAGCTAGAAGCATACTCTATTATAATATTGCCTCTGAGATCTGGACTGAGTTAGAGGAGAGATATGCACAATCGAATGCTCCTAGGAAATATCAAGTTCATAATCATATTGCTTCTATAAGTCAAGGCAATAAAAATGTGAGTGAGTTTTATACTGAACTGAAAACTTCATGGGATGAATACATGTCTTTGATAAGTTTGCCAATCTGTACTTGTGGTACTGGAACCAAATTTTTGGAGATTCTTCAAGAACAACAATTGCTTCAATTCTTGTTGAAATTGAATGATGATTACAAAACTGCTCGTGACAATATTTTGATGCGCCAACCTCTTCCATCTCTAAGTCAAGCTTATAGATTAATTTTGCAAGAAGAAAAACAAAGAGAATGTGGTGGCAATGTCTCTCTTGGGATTGATTCAGCAGCCATGGCTGCACCATTTCATAGAAATATGACTAAGCCTCAATTTCAGTCAAACAAATCCAAGTGGAATTCTGCTACTCCTGGTGTTCAACAACAATTTCCTAGGCCTGTTCAGAATCATAATTTTGGTATTGCACCCAATGGGAGACGATCAAGATATTTCTTTGAGAATTGTAAAGTTCATGGTCATAGCATTGAGAGGTGTTTCAAAATACATGGTTTTCCTGCTGATAAGGGAAAGAAACTTGTTAATGCTGCACATCTGAACTCTCCTCTTATCAATGATTCTAGCTTAACTTCAGGACCTTCTGCTTCCTCTGCCACAACTTCTGACACTACTATTACTTCAGAACAGTATAACCACTTGCTTCAACTTCTCAATCAAAGTAATTTTGATGCTGATCTTTCTTCTGGCAATTCAGGGAGTGCTTCTGCTTTGTTGGCTGGAGCCTTCTCAGAGGCAGCCTCTGGTCCTTGGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50326.p1 GENE.S_Transcript_50326~~S_Transcript_50326.p1 ORF type:complete len:399 (+),score=85.25,UBN2_3|PF14244.2|4.9e-43,UBN2_3|PF14244.2|3e+03,Retrotrans_gag|PF03732.13|3e-10 S_Transcript_50326:587-1783(+)
MSGSSSSETVSSAIDVHSELYIHHSDVSNSFLLATQKLNGDNYGEWRRSAKITLSAKNKLGFVIGTCKKPADGSSTLSYWEMCNNMVISWILHSVESDIARSILYYNIASEIWTELEERYAQSNAPRKYQVHNHIASISQGNKNVSEFYTELKTSWDEYMSLISLPICTCGTGTKFLEILQEQQLLQFLLKLNDDYKTARDNILMRQPLPSLSQAYRLILQEEKQRECGGNVSLGIDSAAMAAPFHRNMTKPQFQSNKSKWNSATPGVQQQFPRPVQNHNFGIAPNGRRSRYFFENCKVHGHSIERCFKIHGFPADKGKKLVNAAHLNSPLINDSSLTSGPSASSATTSDTTITSEQYNHLLQLLNQSNFDADLSSGNSGSASALLAGAFSEAASGPW*

Click here to download the sequence:
Link to NCBI Protein BLAST