Transcript Information: S_Transcript_50342.p1


Annotated TAIR IDAT5G04460.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1260009-1263695 | Forward length=863
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.295052849815
Replicate 212.801548824651
Replicate 311.258647027779
Condition 2: 8 Hour
Replicate 114.655006601658
Replicate 213.969398511085
Replicate 314.62366289179
Condition 3: 24 Hour
Replicate 115.824840017024
Replicate 213.545580407259
Replicate 312.786989954222


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50342.p1 GENE.S_Transcript_50342~~S_Transcript_50342.p1 ORF type:complete len:860 (+),score=212.54,zf-C3HC4_3|PF13920.2|3.8e-11 S_Transcript_50342:479-3058(+)
ATGACTGATGTCCAACCAATGCAGCAGAAGCCGGAGAGTGCGGCAGTTGATGCTAGGGCAGAATTCGAGCGAGGGTTGGAGGAGTTGATGAGGGGGCATTTGGATGATTGTATGTCCTTTGCGTCGTGCAGCTCCACACGCAATACGGAGGAGGAGGATGAGGAGGGTGATCAGCTTGTGCGTAGGAGGCGGAGGTCGGATATTGATGGGGATGACCTGGCCGAGTCTTCTGCTGCCAGGAGACGGCACTCGAGAATCTTGAGCAGGTGGGCTGCAAGGCAAGCTCAAGAAATGATTACCACTATTGAGAGGCGGAATAGGGAGTCGGAGTTGATGGCTCTTGCGGGGTTGCAAACTGTTTCGATGCTTGATTATTCGTTTCTGAGGGAGCCTCAGTCTCCGACTTCGAGGAGGCAGGGGAATGTTGAGAGGCCGAGCTCACGGGCTTCTTCTATCCTGCAGATGTGGCGGGAGTTGGAGGATGAGCATGTATTGAGCCGTGCTAGGGAGAGGGTAAGGGAACGGCTGAGACATGAGAGAAGTGTGGATACTCGTACTGATATCTCGACCATAACGATGTCTGAAAGCAGGGCAGGTGAAAATCAAGGTAGTTTGGAGGATGTAAGTGAGAGTGAGCATGATTTCGGGGCTTGGTCTCATGATCAGATGGAGACCAACAATGGACATGGGGATCATAACCATTCTAGCCGAGAGCAATCTCCTGACCTTGGTGAAGTAGAGAGGGAGAGGGTGAGGCAGATTGTCCGTGGATGGATGGAGAGTGGCATAAATGAACACTCTACTAATGGCACAAGGAGGAATGACAATCCCAGAGCTGAATGGCTTGGTGAGACAGAACGTGAAAGGGTACGACTTGTGAGGGAGTGGGTACAGATGGCAAGTCAGCAAAGAGGAACACGAGGCGGGAGAAGGGAAGATCAACTTGCTGGAATTGGTGATCAAGTTGACCGGGTTCGTGATGGCCTTGTTGACCATGAGGAAGGTCAGCCTGAGCATATTCGCAGAGATATGTTGAGGTTGCGTGGAAGGCAAGCTTTGATTGACCTGCTTGTGAGGGTAGAACGTGAACGACAGAGGGAGCTTCAGGGTTTGTTGGAGCACCGGGCTGTATCAGAGTTTGCTCATCGTAATCGTATACAGTCTCTACTGAGAGGTAGATTCTTGAGGACTGAGAACACAGCTGAGGTTGAAAGACCACCTTCCGTGGCAGCAAGCGAACTACTTCAGTTGAGAGAACGTCACACTGTTTCTGGTTTAAGGGAAGGTTTCCGCTCTAGACTGGAAACTATTGTCCGTGATCAAGCAAGCAATAGCTCCGACACAGCATCCAGCAATTTTGGCAATGATTACCAAATTGATGAGGCCCATCACCACTCTTCCGTGGAGGTCCAAGTTCGGAATTCTGATCAACAGCAACCTAGGACTCATGGGAATGGGGTCAATGAGCTGCTAGATAATACTGTAAATGTGTCTGGTGAAGCTTCCACTGATAGAGCTGGCAGGGAAGAAGCAGCCATCCACAGAGGAGATTGGCAAGGGCAGGTTGCTGAAGATGAAAGAAACCTACCACAGTCAGCCTATGCAGGGCTTGACCAATGGAGACAAAATACTGCAGAAAATACGAATGGTGACTGGCAGGAAATTTCAGACAATGACTGGCGACAGACAGCTCATGGGAATGATGGTGCAGAAGAGAGCCATTTAACAGCTCAACAGATCTGGCAAGAGGATGTTTCTCGAGCAACATTGGGAAATTGGTCAGAAGGGCCTTCTGATCCTCCTAGAATGCGACGCGGAAATCCATTGAGAAGAGTCAATAGATTCCATCCACCTGATGATGATAATGTGTATAGTATGGAGCTTCGTGAGCTTCTTAGCAGGAGGAGTGTTTCAACCCTTCTTAGAAGTGGATTTCGAGAGAGTTTGGACCAGTTAATACAATCTTATGTGCAAAGGCAAGGCCATGCTCCCATTGATTGGGATCTTCATAGAAATTCACCTGCTCCAGCTGTGACACAGCACGACCAGGAGTCTCAACGGGAGGAACAAAACATTGCTGATACTATTGCTAGACGCTCTGTTCTTCCATCTCCACCAGCACCACCCCCTCAGCCTTTATGGCAGCAGGATGTCCATCATACTAACTGGTCTCGCCATAGCATGCATCGTTCAGAACTCGAGTGGGAGATGATGAATGATCTTCGAGCTGACGTAGCCAAGCTCCAGCAAGGTATGAACCACATGCAGAGGATGCTGGAGGCCTGCATGGACATGCAGCTGGAGTTGCAACGTTCAGTTCGGCAAGAGGTCTCAGCAGCTCTGAATCGGTCCTCTGGTGCAAAAGGTGCTGAGACCTCAGAGGATGGATCCAGATGGGGGCATGTGAGGAAAGGGACCTGCTGTGTTTGTTGTGACAACCATATAGATTCTCTACTGTACAGATGTGGCCACATGTGTACCTGTTTGAAGTGTGCAAATGAGTTGGTTCGAGGTGGAGGCAAGTGTCCTTTGTGCAGGGCGCCGATTGTTGAGGTCATTCGAGCATATTCAATACTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50342.p1 GENE.S_Transcript_50342~~S_Transcript_50342.p1 ORF type:complete len:860 (+),score=212.54,zf-C3HC4_3|PF13920.2|3.8e-11 S_Transcript_50342:479-3058(+)
MTDVQPMQQKPESAAVDARAEFERGLEELMRGHLDDCMSFASCSSTRNTEEEDEEGDQLVRRRRRSDIDGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLQTVSMLDYSFLREPQSPTSRRQGNVERPSSRASSILQMWRELEDEHVLSRARERVRERLRHERSVDTRTDISTITMSESRAGENQGSLEDVSESEHDFGAWSHDQMETNNGHGDHNHSSREQSPDLGEVERERVRQIVRGWMESGINEHSTNGTRRNDNPRAEWLGETERERVRLVREWVQMASQQRGTRGGRREDQLAGIGDQVDRVRDGLVDHEEGQPEHIRRDMLRLRGRQALIDLLVRVERERQRELQGLLEHRAVSEFAHRNRIQSLLRGRFLRTENTAEVERPPSVAASELLQLRERHTVSGLREGFRSRLETIVRDQASNSSDTASSNFGNDYQIDEAHHHSSVEVQVRNSDQQQPRTHGNGVNELLDNTVNVSGEASTDRAGREEAAIHRGDWQGQVAEDERNLPQSAYAGLDQWRQNTAENTNGDWQEISDNDWRQTAHGNDGAEESHLTAQQIWQEDVSRATLGNWSEGPSDPPRMRRGNPLRRVNRFHPPDDDNVYSMELRELLSRRSVSTLLRSGFRESLDQLIQSYVQRQGHAPIDWDLHRNSPAPAVTQHDQESQREEQNIADTIARRSVLPSPPAPPPQPLWQQDVHHTNWSRHSMHRSELEWEMMNDLRADVAKLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSSGAKGAETSEDGSRWGHVRKGTCCVCCDNHIDSLLYRCGHMCTCLKCANELVRGGGKCPLCRAPIVEVIRAYSIL*

Click here to download the sequence:
Link to NCBI Protein BLAST