Transcript Information: S_Transcript_504099.p1


Annotated TAIR IDAT3G30370.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transposase, MuDR, plant (InterPro:IPR004332); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (TAIR:AT1G18050.1); Has 35 Blast hits to 35 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:11965180-11965719 | Reverse length=179
E-Value4E-05
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.07496620066248
Replicate 20.18644610893674
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.12306976614419
Replicate 20.12768344550055
Replicate 30.071048012408778


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_504099.p1 GENE.S_Transcript_504099~~S_Transcript_504099.p1 ORF type:internal len:355 (-),score=102.86,DBD_Tnp_Mut|PF03108.11|4.4e-12,DBD_Tnp_Mut|PF03108.11|6.9e+03 S_Transcript_504099:1-1062(-)
AGAGGCAAGGCTAGCACAAGTAGAGGCAAGGCTGGCACAAGCAGAGGCAAGGCTAGCACAAGTAGAGGCAAGGCTGGCACAAGCAGAGGCAAGGCTAGCACAAGTAAGGATAAATTTAGCAAGGGTAGTTCAAGCAAAGTCACATCTGGCAAGGGCAAGGGCATTAGCAATGAAGAGCAAGATGATGGAGGGAGTTTATTTGAAGAAGAAGATGCTGAAATAGGTCTTGAAGATGAGATAATAGGGTCAGAAACTGACACCAGTGATGAGGAGAACATCATAGCTAGGCATCAGCTACATGAATGGTACAAGCTTCTATCTGAGAAGCAAAAGAAGGTCTACAAAAAGGTTGTGTTAGGTGGAGATGAAGAGCATGAAGAGCAACTGAGGCAACAACAAATTCAGCAGCAACAAGAAGGTGGATATGTTAGTGAGTATGAGGACAGTGAGGGAGATGTTGCCACAACAAGTGAAAGTGATGGGGGTGATGAGGATGAATCAGTTGGGAAGAAGAAAAGAGACAGACCTCCAGTGATTGGTGAGCACACCAATTTTGAGAAATTGAAGTGGCAAGTAGGTATCAGATTTCCCAGTAGAGTGGCATTTCGAGATGCAGTTATCAGGTATGCCTTACTAGCTGGTAGAAACTTGAAATTTGGAGTCAGTGACAATAATAGATCTAAAAGGTTAGGGGTTGTTTGTGAAGAGGGATGTCCTTTCAGATTATATGCTTCTTGGGATCCAAACAGAGCTAGGTTTGTTGTGAAATCTGTTGTTGATAAGCATACTTGTTTTAGTAACATTATGAAAAATAGGCAGCTTAAATCAAAATGGATGGCACAACAATTTCTTGAAATGTTCAAGTTGAGGCCTCATTGGCCAGGGTGTGAAATTGAGAAGGATATCAAGAAGAAGTATAAGGTTGTGGTAAGAAAGGGTTTTGCATACAAGGTGAAGTATGCAGCACACAAGCTGCTACATGGGTCCATGTTTGACCATTATAACAAGGGTGTCATGCCATGTGTTGTGCTTACTTTATGCATAAGCCCCCTGAACTTTTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_504099.p1 GENE.S_Transcript_504099~~S_Transcript_504099.p1 ORF type:internal len:355 (-),score=102.86,DBD_Tnp_Mut|PF03108.11|4.4e-12,DBD_Tnp_Mut|PF03108.11|6.9e+03 S_Transcript_504099:1-1062(-)
RGKASTSRGKAGTSRGKASTSRGKAGTSRGKASTSKDKFSKGSSSKVTSGKGKGISNEEQDDGGSLFEEEDAEIGLEDEIIGSETDTSDEENIIARHQLHEWYKLLSEKQKKVYKKVVLGGDEEHEEQLRQQQIQQQQEGGYVSEYEDSEGDVATTSESDGGDEDESVGKKKRDRPPVIGEHTNFEKLKWQVGIRFPSRVAFRDAVIRYALLAGRNLKFGVSDNNRSKRLGVVCEEGCPFRLYASWDPNRARFVVKSVVDKHTCFSNIMKNRQLKSKWMAQQFLEMFKLRPHWPGCEIEKDIKKKYKVVVRKGFAYKVKYAAHKLLHGSMFDHYNKGVMPCVVLTLCISPLNFL

Click here to download the sequence:
Link to NCBI Protein BLAST