Transcript Information: S_Transcript_50470.p1


Annotated TAIR IDAT1G75850.1
Annotated Gene NameVPS35 Homolog B
Annotated Gene Symbol(s)VPS35B
Annotation TypeOrtholog
Chromosome Positionchr1:28478053-28483874 | Reverse length=790
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.859713350376
Replicate 211.392624330707
Replicate 311.497675518114
Condition 2: 8 Hour
Replicate 114.637704940601
Replicate 217.384673313238
Replicate 316.134539559942
Condition 3: 24 Hour
Replicate 113.86627365146
Replicate 212.53074720657
Replicate 311.4039218406


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50470.p1 GENE.S_Transcript_50470~~S_Transcript_50470.p1 ORF type:complete len:794 (+),score=163.98,Vps35|PF03635.13|2.8e-273 S_Transcript_50470:182-2563(+)
ATGATAGTGGACGGAATTGAAGACGAAGAGAAATGGCTTGCAGAAGGCATCGCTTCTGTTCAACACAATGCCTTCTTTATGCACCGTGCTTTGGATTCGGATAGTTTAAGAGAAGCGCTCAAGTTCTCCGCTCAAATGTTATCGGAGCTCCGTACCTCCAAGCTCTCTCCTCACAAGTACTTTGAGCTCTATATGCGAACATTTGATGAATTGAGGAAACTTGAGATGTTCTTCAAGGAAGAGAGTAGACATGGAGTAACAGTTGTTGATCTCTATGAACTTGTTCAGCATGCTGGCAATGTCTTGCCTAGGCTGTACCTGCTTTGCACCGTGGGGTCTGTTTACATCAAATCGAAGGAGGTCCCCACAAAGGATATTCTCAAAGATCTTGTTGAAATATGTCGTGCTGTCCAACATCCTGTACGGGGACTTTTCTTGAGGAGCTACCTTTGTCAAGTCACTCGAGGCAAACTATCTGATATTGGATCAGAGTATGCAGGGGATGGTGACACTGTGATGGATGCTGTGGACTTTGTGCTGCAAAACTTCACAGAGATGAATAAGCTCTGGGTTCGGTTGCAACAGCAGGGGCCTGTTCGGGTAAAAGAGAAACGAGAAAAGGAGAGGAATGAACTTCGTGATCTTGTTGGAAAGAATCTGCATATTCTCAGTCAAATAGAGGGTGTAGACCTTGAAATGTACAGAGATACTGTTCTCCCCAGAATCCTAGAACAGGTTATCAACTGTAAAGATGAGCTAGCCCAAAACTATTTGATGGATTGTATCATCCAAGTTTTTCCGGATGAGTATCACTTGCAAACGCTTGACATATTATTAGGTGCTTGTCCACAGCTTCAGCCAACAGTTGATGTCAAAATGGTGCTGTCTCAATTGATGGATAGACTTTCAAATTATGCTGCATCAAGTCCAGAAGTGTTACCAGAATTCCTGCAAGTAGAAGCTTTTGCAAAGCTGAATAATGCCATTGGGAAGGTGATTGAGGGACAGGTTGACATGCCCATTGTTGGAGCCATTACTTTATATACCTCACTTCTTACTTTTGCTCTCCGTGTCCATCCTGATCGGCTTGACTATGTGGATCTGGTGCTGGGTGCATGTGTCAGGAAACTTTCTGGCAAACCAAAGCTTAACGACAGCAGGGCAACAAAACAAATCATTGCACTTTTGAGTGCTCCACTGGAAAAGTATAATGATGCTGTTACGACCTTGACGCTTTCTAATTATCCCCGTGTAATGGAATATCTTGATAATGATACCAACAAAGTCATGGCCATGGCTATCATACAAAACATTTTAAAGAATGATACTTGCATTTCTACGGCTGATCAGGTGGAGGCATTGTTTAAGTTAATCAAAGGGCTTATTACAGATATAGATGACTCTGTCGATGAGCTTGATGAGGAGGATTTCAAGGAATATCAGAATTCTGTTGCTCGTCTTATACACATGTTATATAATGATGACCCTGATGAAATGTTAAAGATTATATGTACTGTAAGGAGACATATAATGGCTGGAGGACAGAAACGATTACCTTTCACTATTCCATCTCTTGTTTTTTCTGCACTCAAGTTAGTCTGGCGGTTACAAGGTCAAGATGGTGAAGCTGATGGAGAAGAAGCTCCTGCAACACCTAAGAAAATCTTTCAGCTTGTAAATCAGATTGTTGAAGCTCTTTCATGTGTTCCATCTCCTGATCTGGCGTTGAGGCTATATTTGCAGTGTGCTGAGGCTGCGAATGATTTTGATCTTGAGCCAATGGCATATGAATTTTTCACCCAGGCCTTTATATTGTACGAGGAAGAAATTGCGGATTCGAAGGCCCAATTTACTGCCATACATCTTATAATTGGGACTCTACAGAGGATGAATGTATTTGGTGTGGAGAACAGAGACACTCTAACCCATAAGGCAACAGGGTACTCAGCAAAACTCCTGAAGAAGGCTGATCAGTGTAGAGCAGTTTATGCTTGCTCTCATCTCTTTTGGACAGATAACCAGGATGGTATAAAGGATGGAGAAAGGGTCCTGCTATGCCTGAAGCGTTCATTAAGGATTGCAAATGCAGCTCAACAGATGGCTAGTGTCACACGTGGAAGTAGTGGGCCGGTTACCTTGTTTGTTGAAATTCTAAACAATGGCCATTGCAGGTACCTTTATTACTTCGAAAAGGGTAATCCCCAGGTTACTAGCTCCACGATCCAGGATCTCGTGGAGTTGATAAGAACTGAGATGCAAAGTGACACATCAACTCCGGATCCTGCTACCACTGCTTTCTTCAACAGCACTTTGCGGTATATCCAATTCCAGAAACAGAAAGGTGGCTTGATGGGCGAAAAGTATGGTCCTATTAAGTTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50470.p1 GENE.S_Transcript_50470~~S_Transcript_50470.p1 ORF type:complete len:794 (+),score=163.98,Vps35|PF03635.13|2.8e-273 S_Transcript_50470:182-2563(+)
MIVDGIEDEEKWLAEGIASVQHNAFFMHRALDSDSLREALKFSAQMLSELRTSKLSPHKYFELYMRTFDELRKLEMFFKEESRHGVTVVDLYELVQHAGNVLPRLYLLCTVGSVYIKSKEVPTKDILKDLVEICRAVQHPVRGLFLRSYLCQVTRGKLSDIGSEYAGDGDTVMDAVDFVLQNFTEMNKLWVRLQQQGPVRVKEKREKERNELRDLVGKNLHILSQIEGVDLEMYRDTVLPRILEQVINCKDELAQNYLMDCIIQVFPDEYHLQTLDILLGACPQLQPTVDVKMVLSQLMDRLSNYAASSPEVLPEFLQVEAFAKLNNAIGKVIEGQVDMPIVGAITLYTSLLTFALRVHPDRLDYVDLVLGACVRKLSGKPKLNDSRATKQIIALLSAPLEKYNDAVTTLTLSNYPRVMEYLDNDTNKVMAMAIIQNILKNDTCISTADQVEALFKLIKGLITDIDDSVDELDEEDFKEYQNSVARLIHMLYNDDPDEMLKIICTVRRHIMAGGQKRLPFTIPSLVFSALKLVWRLQGQDGEADGEEAPATPKKIFQLVNQIVEALSCVPSPDLALRLYLQCAEAANDFDLEPMAYEFFTQAFILYEEEIADSKAQFTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKADQCRAVYACSHLFWTDNQDGIKDGERVLLCLKRSLRIANAAQQMASVTRGSSGPVTLFVEILNNGHCRYLYYFEKGNPQVTSSTIQDLVELIRTEMQSDTSTPDPATTAFFNSTLRYIQFQKQKGGLMGEKYGPIKL*

Click here to download the sequence:
Link to NCBI Protein BLAST