Transcript Information: S_Transcript_50574.p1


Annotated TAIR IDAT1G72440.1
Annotated Gene NameCCAAT-binding factor
Annotated Gene Symbol(s)EDA25, SWA2
Annotation TypeOrtholog
Chromosome Positionchr1:27268325-27273596 | Reverse length=1043
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5484001646907
Replicate 23.3545761900315
Replicate 33.8179699260787
Condition 2: 8 Hour
Replicate 17.3079992548772
Replicate 26.9862965927567
Replicate 36.3822888735383
Condition 3: 24 Hour
Replicate 12.5549571334028
Replicate 22.4916939043002
Replicate 32.300958436958


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50574.p1 GENE.S_Transcript_50574~~S_Transcript_50574.p1 ORF type:3prime_partial len:855 (+),score=234.94,CBF|PF03914.13|2.2e+02,CBF|PF03914.13|1.2e-50 S_Transcript_50574:129-2690(+)
ATGGCAAACACCAAACCCAAGAAAACCTCCCAATCGAAATCAAAACCCAAAGAAGACGACCTTGACAAAATCCAATCTGATGTAGCTTCATTTGCATCCTCTCTTGGTCTTGCTTCTTCTTCTCTCCCTTCTGGTTTCAATGACACTGATTTCAGACCCAAAAAGAAACCCCCCAATCAACAACAACAAAACCCTAAACCAACAACCCATAACAAAACCGAAAACCCCACTTCCCAAAAGCCTCAATTTGAAAAACCCACATCAAAAGAAGATCAAGTCTTTGTCGGTAACTTCAAGTCATCATTTGATAAGTTCAAGAACCTCCCTAAGCTTCCCTTGATTAAAGCTAGTGTCTTGGGGGCATGGCATGAGGATGAGGCTGAGCTGGAGGCCAAAGTTTTGGGGGAAGAAAGAAGGAAAAATTTGGAAATTGGGAATGCTGAGGAATGGAAGAAATTGGTTGATAAGAAGAAAGAGCTTGGGGAAAGGTTGTTGGGTCAGTATGCATTGGATTATGAGGCTTCAAGGGGTCAAAGTGGTGATATCAAGATGCTTATTGCCACTCAAAGGTCTGGGACTGCTGCTGATAAGGTTTCGGCTTATTCGGTTTTGATTGGAGATAACCCCATTGCCAATATGAGATCACTTGATGCTCTTTTGGCCATGGTAACATCAAAGGTTGGGAAACGTCATGCTCTAACAGGCTTTGAAGCTCTAAAAGAGTTGTTTCTACAAAGTTTGTTGCCAGACCGTAAATTGAAGACCCTCTTCCAGCAACCCCTTAGCCATCTTCCTGAAACAAAAGATGGTTACTCTCTTCTAATGTTCTGGTACTGGGAGGAATGCTTAAAATTAAGGTATGAACGGTTTGTTTCTGCTCTTGAAGAGGCATCAAGGGACATGTTGCCTATACTAAAAGACAAGGCATTGAAGATAATGTATGCACTTATAAGAAGTAAATCAGAACAAGAGCGAAAGTTACTCACTGCCTTGGTCAACAAGCTTGGGGATCCTAACAGCAAGGCTGCATCAAATGCCGACTATTATTTGACTAACCTTCTGTCTGATCATCCAAACATGAAGGTGGTGGTGATTGATGAGGTGGACTCATTTTTATTTCGCCCGCATCTAGGATTGCGTGCTAAGTATCACGCAGTTAATTTTTTGAGTCAAATTCGCTTGAGTCAGAAGGGGGATGGGCCTAAGGTGGCAAAACGGCTGGTAGATGTATATTTTGCACTATTTAAGGTATTGATCTCTGTGGCAGCTAGTGGTGAAAAAGCCAAGGTTACAGAGACGAAGAAAGGTTCTAACAAGGACAACAAAGTGCAGTATATGTCTGAATCTCACGTGGAATTGGATTCACGACTTTTGTCTGCACTTCTATCAGGTGTAAACAGGGCATTTCCTTTTGTATCTGGGGACGAAGCGGATGAAGTTGTTGACGTTCAAACTCCAATGCTTTTCCAGCTTGTTCATTCACAAAACTTCAATGTCGGCATCCAGGCATTAATGCTTCTTGATAAAATTTCATCAAAAAATCAGGTTGTCAGTGATAGATTTTATCGTGCCTTGTATGCAAAATTGCTAATTCCTGCTGCCTTGAACACCTCTAAGGCAGAGATGTTTATTGGACTACTGTTGAGAGCTATGAAGAATGATATAAATTTAAAGCGTGTAGCTGCCTTCTCAAAACGTCTTCTACAGGTAGCTCTTCAGCAACAACCTCAGTATGCATGTGGGTGTCTGTTTCTCCTCTCTGAAGTTCTGAAAGCAAGGCCACCTTTGTGGAATATGGCAATCCAAAATGAGGCTGTTGATGAAGATCTTGAACATTTTGAAGATGTGCCAGATGAAACTGAGAATCCACCTGGTATTGATGCTGAGGTGCCACAAAGAAATGACGGTGATACAGGTAGAACTGGTGACACTGAGAGTGATTCCTCAGAAGACGGGGAAGCCTCTTCAGCTTCGTCTTCTGAGGAAGACGAAGATGAGAATTTACTCATCAAAACAAATGTCGAGGAATTCCAGGAATCCAACTCGAAGTTGTCTGAGCACCTTCAGGAATCGTCTACCAAGCTCTCGCTACCTGGAGGATATGATCCTCGGCGTAGAGAACCTTCATTCTGCAATGCAGACCGTACAAGCTGGTGGGAGCTTACTGTACTTGCCTCTCACACTCACCCATCAGTATCAACCATGGCAAAGACACTTCTTTCTGGTGCAAATATCGTCTACAATGGCAACCCATTGAACGATCTTTCCCTGACTGCTTTTCTTGACAAATTTATGGAAAAGAAGCCTAAGCAGAGCACATGGCATGGTGGCTCACAAATCGAACCAGCTAAGAAGCTTGATATGAACAAGCATTTGATTGGGCCTGAAATCCTTTCATTGGCTGAAGATGATGTGCCCCCTGAAGACGTTATCTTTCATAAGTTCTACATGAACAAGATGAGTACATCAACCAAGCCAAAGAAGAAAAAGAAGAAGAAGAAGGCAGCTGAAGAAGAGGAAGCAGAGGACTTGTATGGTGGAGATGAGAGTGATAATGAAGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50574.p1 GENE.S_Transcript_50574~~S_Transcript_50574.p1 ORF type:3prime_partial len:855 (+),score=234.94,CBF|PF03914.13|2.2e+02,CBF|PF03914.13|1.2e-50 S_Transcript_50574:129-2690(+)
MANTKPKKTSQSKSKPKEDDLDKIQSDVASFASSLGLASSSLPSGFNDTDFRPKKKPPNQQQQNPKPTTHNKTENPTSQKPQFEKPTSKEDQVFVGNFKSSFDKFKNLPKLPLIKASVLGAWHEDEAELEAKVLGEERRKNLEIGNAEEWKKLVDKKKELGERLLGQYALDYEASRGQSGDIKMLIATQRSGTAADKVSAYSVLIGDNPIANMRSLDALLAMVTSKVGKRHALTGFEALKELFLQSLLPDRKLKTLFQQPLSHLPETKDGYSLLMFWYWEECLKLRYERFVSALEEASRDMLPILKDKALKIMYALIRSKSEQERKLLTALVNKLGDPNSKAASNADYYLTNLLSDHPNMKVVVIDEVDSFLFRPHLGLRAKYHAVNFLSQIRLSQKGDGPKVAKRLVDVYFALFKVLISVAASGEKAKVTETKKGSNKDNKVQYMSESHVELDSRLLSALLSGVNRAFPFVSGDEADEVVDVQTPMLFQLVHSQNFNVGIQALMLLDKISSKNQVVSDRFYRALYAKLLIPAALNTSKAEMFIGLLLRAMKNDINLKRVAAFSKRLLQVALQQQPQYACGCLFLLSEVLKARPPLWNMAIQNEAVDEDLEHFEDVPDETENPPGIDAEVPQRNDGDTGRTGDTESDSSEDGEASSASSSEEDEDENLLIKTNVEEFQESNSKLSEHLQESSTKLSLPGGYDPRRREPSFCNADRTSWWELTVLASHTHPSVSTMAKTLLSGANIVYNGNPLNDLSLTAFLDKFMEKKPKQSTWHGGSQIEPAKKLDMNKHLIGPEILSLAEDDVPPEDVIFHKFYMNKMSTSTKPKKKKKKKKAAEEEEAEDLYGGDESDNEE

Click here to download the sequence:
Link to NCBI Protein BLAST