Transcript Information: S_Transcript_50577.p1


Annotated TAIR IDAT5G06550.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2001246-2003068 | Reverse length=502
E-Value1.6E-195
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.893255256796
Replicate 211.031394778757
Replicate 310.309604021889
Condition 2: 8 Hour
Replicate 111.921025643118
Replicate 28.4068126875991
Replicate 310.260734095566
Condition 3: 24 Hour
Replicate 17.5303790914781
Replicate 28.023833912123
Replicate 39.7128369758832


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50577.p1 GENE.S_Transcript_50577~~S_Transcript_50577.p1 ORF type:complete len:322 (+),score=98.99,Cupin_8|PF13621.2|4.3e-20,Cupin_8|PF13621.2|1.7e+03,JmjC|PF02373.18|3.9e-12 S_Transcript_50577:914-1879(+)
ATGAAGCCTGAGTGGTTACAAAGGGATAATATAAAAAGAAGGAGGGGGGTTTCTGTTGAGGAATTTGTGTTGAATTTTGAGGAACCTAATAAGCCTGTTTTGTTGGAAGGGTGTTTGGATAATTGGGTTGCAATGGGGAAATGGGATAGGGATTATTTGATCAAGGAATGTGGGGATGTTAAGTTTGCTGTTGGTCCTGTGGAAATGAAGCTTGAGGACTACTTTAGGTATTCGGATTTGACAAGGGAAGAAAGGCCATTGTACTTGTTTGATCCAAAGTTTGCAGAGAAGGTTCTGAGCTTGGGTAAGGAGTATGAAGTGCCTGTGTACTTTAGGGAGGATTTGTTTTCGGTTTTGGGTGATGAGAGGCCTGATTATCGGTGGGTTATCATTGGTCCTGCTGGGTCTGGTTCGTCTTTTCACATTGATCCGAATTCAACATCGGCTTGGAATGCTGTGATTAAGGGGTCTAAGAAGTGGGTCATGTTCCCTCCAGATGTTGTACCTCCTGGAGTCCATCCTAGCCCTGATGGTGCAGAGGTTGCTTGTCCAGTTTCTATAATTGAATGGTTCATGAATTTTTATGGAGCTACAAAGGATTGGACAAAGAGACCTATTGAATGTGTTTGTAAAGCTGGTGAAGTTGTCTTTGTGCCTAATGGGTGGTGGCATTTGGTTATCAACCTAGAGGAGTCGATTGCTATCACACAGAATTATGTTAGCAGGAGGAATTTGCTGAAGGTGTTGGAGTTTCTGAAGAAGCCAAATGCGAGTGAACTTGTATCTGGAACAAGGGACCGTGTGAATTTGCATAAGAAGTTCAAAAAGGCTATTGAGGCTTCATTTCCGGGGACTATTGATCAGCTGATGAGAAAAGCTGAAGAGAGAAGTACGGAGCAGAAGAAGCGTGCATTTTGGGACTCTGTGACAGATTCAAATGCTGGTGCTTTCAAATTTTCTTTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50577.p1 GENE.S_Transcript_50577~~S_Transcript_50577.p1 ORF type:complete len:322 (+),score=98.99,Cupin_8|PF13621.2|4.3e-20,Cupin_8|PF13621.2|1.7e+03,JmjC|PF02373.18|3.9e-12 S_Transcript_50577:914-1879(+)
MKPEWLQRDNIKRRRGVSVEEFVLNFEEPNKPVLLEGCLDNWVAMGKWDRDYLIKECGDVKFAVGPVEMKLEDYFRYSDLTREERPLYLFDPKFAEKVLSLGKEYEVPVYFREDLFSVLGDERPDYRWVIIGPAGSGSSFHIDPNSTSAWNAVIKGSKKWVMFPPDVVPPGVHPSPDGAEVACPVSIIEWFMNFYGATKDWTKRPIECVCKAGEVVFVPNGWWHLVINLEESIAITQNYVSRRNLLKVLEFLKKPNASELVSGTRDRVNLHKKFKKAIEASFPGTIDQLMRKAEERSTEQKKRAFWDSVTDSNAGAFKFSF*

Click here to download the sequence:
Link to NCBI Protein BLAST