Transcript Information: S_Transcript_50620.p1


Annotated TAIR IDAT4G01400.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:573098-577243 | Reverse length=1110
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.431715187592
Replicate 220.195040176984
Replicate 321.077412666972
Condition 2: 8 Hour
Replicate 124.1180009539
Replicate 223.348397588286
Replicate 323.31773276365
Condition 3: 24 Hour
Replicate 121.440348611139
Replicate 218.286937912132
Replicate 318.849808318638


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50620.p1 GENE.S_Transcript_50620~~S_Transcript_50620.p1 ORF type:complete len:756 (+),score=176.34,COG4|PF08318.8|3.1e-78,COG4|PF08318.8|2.3e+03,RINT1_TIP1|PF04437.9|2.7e+03,RINT1_TIP1|PF04437.9|6.3e-08 S_Transcript_50620:314-2581(+)
ATGGCGTCCCCTACAAGCACTGATCCAGACCCAACAACAACAACAAGCCAAAGCCCCCACAATCATCAAACATTCACCATAAAATTCGACTCCCCAGAATCCTTAACCTCAGTACGTTCCCTTACAGATGTAGGAACCATAACCCGTCTTCTCCATGAATGCATAGCTTATCAACGTTCTCTTGACTTAAACCTCGAAACCCTTTTATCCCATCGTTCTGATCTCGACAAATACCTCTCTTCTCTCCTCAAATCTTCCCAAATCCTCACCCTTGTCCAATCTGATGCCTCCACCATCCTTTCTTCTGTCAATTCCACTTCCCTTTTGGCTGATTCCGTCTCGGCCAAGGTCCGTGAGCTTGACTTTGCTCAGTCACGCGTTTCCAACACACTTTTGAGGCTGGATGCTATTTCCCAAAAGAGTGCCGCCATTGATGGGGTCAAATTGGGGCTTGACAATGATGACTTTGAGTCTGCTGCTGGGTTTGTTAAGAAGTTTCTCGAAATCGATGCCAAGTTCTTTGATGGGTCCGTTTCTGGGGTCGCTCAGAGAGAGGAGCTCTTGGGGTATAAGAAACAGTTGGAAGGGATTGTCAGGAAGAAATTGTTGGCTGCTATTGATCAAAGGGATCATCCTTTGGTCGTCCGATTTATTCGCCTTTTTCCTCTTCTCGGTATTGAGGAAGAAGGCCTGCAGTTATACGTGAGTTACTTGAAGAAGGTGATTTCGATGAGGTCTAGAATGGAGTTCGATCAGCTGGTTGATATGATGGAGAATAGTTATTCTGCTCCTGCTACCAACACTAGTCAAGTTAATTTTGTTTCCTGCTTGATGAATTTGTTCAAGGATATTGTACTGGCAATTGAGGAGAATGATGAGATTTTACATAGTTTGTGTGGGGAGGATGGGATAGTCTACGCCATCTGTGAGCTCCAGGAAGAGTGTGATTCAAGGGGTTCCTCAATTTTGAAGAAGTATATGGAGTACAGAAAGCTGGGGAAGTTGGCATCTGAGATCAATTCTTATAGCAAGAATATACTATCTGTTGGGAATGTTGAGGGCCCTGATCCAAGGGAGGTGGAGTTGTATTTGGAGGAGATTTTGTCCCTGACCCAATTGGGCGAGGATTACACAGAGTATATGGTGTCCAAAATCAGAGGCTTGAGCTCAATTGATCCAGAGCTCGGTCCACGAGCTACAAAGGCATTTAGAAGTGGAACTTTTAGTAAGGTTGTTCAGGATATTACTGGTTTTTATGTGGTCCTGGAGGAGTTTTTCATGGTGGAGAATGTGAGGAAGGCTATTAAGATTGATGAAGCTGTACCTGACAGCTTGACAACATCCATGGTGGATGATGTTTTCTATGTTCTGCAAAGTTGTTGCCGAAGGGCAATATCCACTTCTAACATCAACTCTGTGGTTGCTGTTTTGAGTGGTGCTGTGCAATTGTTGAGTAATGAGTATCTCGAAGCTTTGCAGCAGAAAATGAGAGAGCCTAATCTTGGTGCCAAGTTGTTTCTGGGAGGTGTTGGTGTTCAGAAAACAGGAACAGAGATTGCTACTGCTTTAAATAATATGGATGTGAGTAGTGAGTATGTCCTCAAGTTGCGGCATGAGATCGAGGAGCAGTGCACAGAGGTATTTCCAGCACCAGCTGACAGAGAGAAAGTAAAGTCATGTTTATCTGAGTTAGGAGAGATGAGCAACAGTTTTAAGCAGGCATTAAACGCTGGCATGGAGCAACTTGTAGCTACTGTTACTCCTCGAATCCGTCCAATTTTGGATAGTGTCGCAACCATCAGTTATGAGTTATCTGAGACCGAATACGCTGATAATGAGGTGAATGACCCTTGGGTCCAGAGGCTTCTTCACGCTGTTGAAACCAATGCAGCATGGCTCCAACCTGTGATGACTGCCAACAACTATGATACCTTCATCCATCTGATCATGGACTTCATTGTGAAGAGGCTTGAAGTAATCATGCTGCAGAAGAGGTTCAGTCAACTCGGAGGTTTACAGCTTGACAGAGATGCAAGGGCTTTGGTGAGTCATTTCTCCAGCATGACTCAGAGAACAGTAAGAGATAAATTTGCTCGCCTTACCCAGATGGCAACAATTCTAAACTTGGAAAAGGTCTCTGAGATTTTAGATTTCTGGGGTGAGAATTCTGGGCCTATGACATGGAGGCTAACTCCTGCTGAGGTGAGGAGAGTCTTGGGGCTTAGGGTTGATTTTAGAACCGAAGCTATAGCTGCCCTGAAACTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50620.p1 GENE.S_Transcript_50620~~S_Transcript_50620.p1 ORF type:complete len:756 (+),score=176.34,COG4|PF08318.8|3.1e-78,COG4|PF08318.8|2.3e+03,RINT1_TIP1|PF04437.9|2.7e+03,RINT1_TIP1|PF04437.9|6.3e-08 S_Transcript_50620:314-2581(+)
MASPTSTDPDPTTTTSQSPHNHQTFTIKFDSPESLTSVRSLTDVGTITRLLHECIAYQRSLDLNLETLLSHRSDLDKYLSSLLKSSQILTLVQSDASTILSSVNSTSLLADSVSAKVRELDFAQSRVSNTLLRLDAISQKSAAIDGVKLGLDNDDFESAAGFVKKFLEIDAKFFDGSVSGVAQREELLGYKKQLEGIVRKKLLAAIDQRDHPLVVRFIRLFPLLGIEEEGLQLYVSYLKKVISMRSRMEFDQLVDMMENSYSAPATNTSQVNFVSCLMNLFKDIVLAIEENDEILHSLCGEDGIVYAICELQEECDSRGSSILKKYMEYRKLGKLASEINSYSKNILSVGNVEGPDPREVELYLEEILSLTQLGEDYTEYMVSKIRGLSSIDPELGPRATKAFRSGTFSKVVQDITGFYVVLEEFFMVENVRKAIKIDEAVPDSLTTSMVDDVFYVLQSCCRRAISTSNINSVVAVLSGAVQLLSNEYLEALQQKMREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLRHEIEEQCTEVFPAPADREKVKSCLSELGEMSNSFKQALNAGMEQLVATVTPRIRPILDSVATISYELSETEYADNEVNDPWVQRLLHAVETNAAWLQPVMTANNYDTFIHLIMDFIVKRLEVIMLQKRFSQLGGLQLDRDARALVSHFSSMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFRTEAIAALKL*

Click here to download the sequence:
Link to NCBI Protein BLAST