Transcript Information: S_Transcript_50753.p1


Annotated TAIR IDAT3G17040.1
Annotated Gene Namehigh chlorophyll fluorescent 107
Annotated Gene Symbol(s)HCF107
Annotation TypeHomolog
Chromosome Positionchr3:5809378-5812605 | Reverse length=652
E-Value2E-110
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.154637626194
Replicate 227.123584069419
Replicate 328.139432374978
Condition 2: 8 Hour
Replicate 18.6290883499739
Replicate 27.2074254638295
Replicate 39.5591687713061
Condition 3: 24 Hour
Replicate 129.276647977085
Replicate 229.089118982013
Replicate 326.84717613225


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50753.p1 GENE.S_Transcript_50753~~S_Transcript_50753.p1 ORF type:3prime_partial len:388 (-),score=116.62,TPR_2|PF07719.13|7.2,TPR_2|PF07719.13|14,TPR_2|PF07719.13|27,TPR_2|PF07719.13|0.01,TPR_2|PF07719.13|0.0052,TPR_2|PF07719.13|0.05,TPR_14|PF13428.2|0.15,TPR_14|PF13428.2|11,TPR_14|PF13428.2|0.0069,TPR_14|PF13428.2|1.4,TPR_14|PF13428.2|73,TPR_14|PF13428.2|0.0011,TPR_16|PF13432.2|0.054,TPR_16|PF13432.2|3.9e-05,TPR_16|PF13432.2|0.0011,TPR_19|PF14559.2|0.0043,TPR_19|PF14559.2|0.0014,TPR_19|PF14559.2|0.015,TPR_12|PF13424.2|0.00016,TPR_12|PF13424.2|1.4e+02,TPR_12|PF13424.2|7.1e-05,TPR_12|PF13424.2|78,TPR_11|PF13414.2|0.0027,TPR_11|PF13414.2|0.13,TPR_11|PF13414.2|0.00015,TPR_11|PF13414.2|5.5e-05,TPR_17|PF13431.2|4.5e+02,TPR_17|PF13431.2|0.084,TPR_17|PF13431.2|6.2e+03,TPR_17|PF13431.2|3.4e+02,TPR_17|PF13431.2|0.072,TPR_17|PF13431.2|12,TPR_17|PF13431.2|6.9e+02,TPR_8|PF13181.2|1.4,TPR_8|PF13181.2|26,TPR_8|PF13181.2|5.7e+03,TPR_8|PF13181.2|1e+02,TPR_8|PF13181.2|3.8,TPR_8|PF13181.2|33 S_Transcript_50753:3-1163(-)
ATGCAGCTCTTCAGTTCACCATCTTCTACATCATCCTCAGCTTCATCAACAACAACAACTACATCAAAAACAAGCTTCACATTCTCAAAAAGATCACCAAAACACCCTCAAAGAACCAGACTAATCCCCATAAGGTCCCTCCAATCCCCTGCTTCTCACCTCTCAGTACCACCCTACACCTCCTCCAACAATGACCGTTCATCCACTGTTAATCTTCCAAAGTCTGATGAGATGGCCACTTCTAGGAGAGAGGATCTTGAGCAGATCCTTGTTCGTCGTCCTGTAATACAATCTGACGGCCAGGATGATGATGATGAAGATGAGGATGAAATGGACGGCGGAGATGAAAGCAGTGATGATGAAGATATTGATGATGATGATGATGAAGAGAAGAGAGAAAAGTCAGTTTTTGACGAGAGTTTGGAGAAGTTTGCAAAGAAGTTGCCTATGTTTGAGCCTGGTAGAGGTGGTCAAAGTGCTCAAGATAATGGAGGTGTTACCAAGGAGCAGCCATTGAAGGTGAACTTGGATTTGGCTTTGTATAAAGCTAAGATTCTTACTAGGAACTTCCAGTTTCAAGAGGCTGAAAAGATACTTCAGCAGTGTATTGAATATTGGCCTGAAGATGGAAGGCCATATGTAGCCTTGGGAAAGGTAATGAGGAAGCAATCAAGAGTATCAGAAGCAAGGTCAGTGTATGAGAAAGGCTCTCAGGCTACTCAGGGAGAAAATGCCTTCATTTGGCAGTGTTGGGCTGTGTTGGAAAATGAGATGGGAAATGTAAGGAAAGCCCGGGAACTATTTGATGCGGCAACTGTAGCTGATAAGAAGCACATTGCAGCCTGGCATGGATGGGCAGTTTTGGAGTTGAAACAAGGAAATATTAAGAAGGCTAGAAATCTGCTTGGCAAAGCTATTAAATACTGTGGTGGAAATGAGTACGTATATCAGACGCTTGCATTGCTCGAAGCTAAGGCTAATCGATATGAGCAGGCTCAGTATTTGTTCAGACAGGCCACCAAATGTAACCCGAAAAGTTGTGCTAGCTGGCTTGCATGGGCACAGTTAGAGATGCGGCAAGAGAACAATCCAGCTGCCCGATTTCTGTTTGAGAAAGCTGTCCAGGCTAGCCCAAAGAACAGATTTGCTTGGCATGTATGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50753.p1 GENE.S_Transcript_50753~~S_Transcript_50753.p1 ORF type:3prime_partial len:388 (-),score=116.62,TPR_2|PF07719.13|7.2,TPR_2|PF07719.13|14,TPR_2|PF07719.13|27,TPR_2|PF07719.13|0.01,TPR_2|PF07719.13|0.0052,TPR_2|PF07719.13|0.05,TPR_14|PF13428.2|0.15,TPR_14|PF13428.2|11,TPR_14|PF13428.2|0.0069,TPR_14|PF13428.2|1.4,TPR_14|PF13428.2|73,TPR_14|PF13428.2|0.0011,TPR_16|PF13432.2|0.054,TPR_16|PF13432.2|3.9e-05,TPR_16|PF13432.2|0.0011,TPR_19|PF14559.2|0.0043,TPR_19|PF14559.2|0.0014,TPR_19|PF14559.2|0.015,TPR_12|PF13424.2|0.00016,TPR_12|PF13424.2|1.4e+02,TPR_12|PF13424.2|7.1e-05,TPR_12|PF13424.2|78,TPR_11|PF13414.2|0.0027,TPR_11|PF13414.2|0.13,TPR_11|PF13414.2|0.00015,TPR_11|PF13414.2|5.5e-05,TPR_17|PF13431.2|4.5e+02,TPR_17|PF13431.2|0.084,TPR_17|PF13431.2|6.2e+03,TPR_17|PF13431.2|3.4e+02,TPR_17|PF13431.2|0.072,TPR_17|PF13431.2|12,TPR_17|PF13431.2|6.9e+02,TPR_8|PF13181.2|1.4,TPR_8|PF13181.2|26,TPR_8|PF13181.2|5.7e+03,TPR_8|PF13181.2|1e+02,TPR_8|PF13181.2|3.8,TPR_8|PF13181.2|33 S_Transcript_50753:3-1163(-)
MQLFSSPSSTSSSASSTTTTTSKTSFTFSKRSPKHPQRTRLIPIRSLQSPASHLSVPPYTSSNNDRSSTVNLPKSDEMATSRREDLEQILVRRPVIQSDGQDDDDEDEDEMDGGDESSDDEDIDDDDDEEKREKSVFDESLEKFAKKLPMFEPGRGGQSAQDNGGVTKEQPLKVNLDLALYKAKILTRNFQFQEAEKILQQCIEYWPEDGRPYVALGKVMRKQSRVSEARSVYEKGSQATQGENAFIWQCWAVLENEMGNVRKARELFDAATVADKKHIAAWHGWAVLELKQGNIKKARNLLGKAIKYCGGNEYVYQTLALLEAKANRYEQAQYLFRQATKCNPKSCASWLAWAQLEMRQENNPAARFLFEKAVQASPKNRFAWHVW

Click here to download the sequence:
Link to NCBI Protein BLAST