Transcript Information: S_Transcript_5078.p1


Annotated TAIR IDAT3G04240.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)SEC
Annotation TypeOrtholog
Chromosome Positionchr3:1114187-1120722 | Reverse length=977
E-Value8.7E-79
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4295104684511
Replicate 24.8902059328512
Replicate 33.1371664472104
Condition 2: 8 Hour
Replicate 17.9145778496576
Replicate 24.0361582597445
Replicate 35.2740241496861
Condition 3: 24 Hour
Replicate 18.895596885345
Replicate 26.7757787187018
Replicate 37.1505795993886


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5078.p1 GENE.S_Transcript_5078~~S_Transcript_5078.p1 ORF type:internal len:194 (-),score=34.73,TPR_11|PF13414.2|2.3e-05,TPR_11|PF13414.2|6.2e-08,TPR_11|PF13414.2|3.9e-13,TPR_1|PF00515.24|18,TPR_1|PF00515.24|0.0069,TPR_1|PF00515.24|1.1e-05,TPR_1|PF00515.24|1e-07,TPR_2|PF07719.13|3,TPR_2|PF07719.13|0.18,TPR_2|PF07719.13|0.00097,TPR_2|PF07719.13|1.5e-06,TPR_12|PF13424.2|37,TPR_12|PF13424.2|3.8e-08,TPR_12|PF13424.2|0.00016,TPR_8|PF13181.2|1.7e+02,TPR_8|PF13181.2|4.5,TPR_8|PF13181.2|0.00059,TPR_8|PF13181.2|0.00042,TPR_17|PF13431.2|3.9e+02,TPR_17|PF13431.2|0.35,TPR_17|PF13431.2|0.21,TPR_17|PF13431.2|4.6e-06,TPR_16|PF13432.2|0.0016,TPR_16|PF13432.2|1e-07,TPR_7|PF13176.2|2.8e+02,TPR_7|PF13176.2|1.3e+02,TPR_7|PF13176.2|0.0057,TPR_7|PF13176.2|7.6e-05,TPR_19|PF14559.2|2.9,TPR_19|PF14559.2|0.087,TPR_19|PF14559.2|1.1,TPR_19|PF14559.2|0.00013,TPR_14|PF13428.2|38,TPR_14|PF13428.2|32,TPR_14|PF13428.2|0.007,TPR_14|PF13428.2|0.004,ANAPC3|PF12895.3|0.00098,ANAPC3|PF12895.3|1.2,TPR_10|PF13374.2|5.7e+03,TPR_10|PF13374.2|94,TPR_10|PF13374.2|18,TPR_10|PF13374.2|0.00016 S_Transcript_5078:2-580(-)
CCTTCCCCTTTCTCCTTTCCCCTGTTTTTGCATCATCATCATCATCATCAACAACAACAACGGCATAATAACAATCAACAACAAGAACAATCGGAGCTGATTAATTCTCCCGATCTTGGCTCAGATGCTTCCTCTGGTTTCTGTTTAAAGCATTTTAAGGGTTCTGATGAAACTCGTGAAGAAGAAGACATGTTACTAGGCCTTGCACACCAAATGTACAAGTCGGGCAACTATAAACAGGCTTTGGAGAACAGTAATAACGTTTATGAGAGAAACCCATTACGCACTGACAATCTCCTTCTCCTGGGTGCCATATACTATCAGCTGCATGATTTTGATATGTGCATTGCTAGAAATGAAGAAGCTATACAAATTGAGCCACACTTTGCAGAGTGTTTTGGCAACATGGCAAATGCATGGAAGGAAAAAGGAAATGTTGATCTCGCAATTCGATACTACTTGATTGCTATTGAGCTCCGTCCAAATTTTGCTGATGCCTGGTCAAATTTAGCTAGTGCTTACATGCGTAAAGGAAGACTGACTGAGGCAGCCCAATGTTGCCGCCAGGCCCTTGCGTTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5078.p1 GENE.S_Transcript_5078~~S_Transcript_5078.p1 ORF type:internal len:194 (-),score=34.73,TPR_11|PF13414.2|2.3e-05,TPR_11|PF13414.2|6.2e-08,TPR_11|PF13414.2|3.9e-13,TPR_1|PF00515.24|18,TPR_1|PF00515.24|0.0069,TPR_1|PF00515.24|1.1e-05,TPR_1|PF00515.24|1e-07,TPR_2|PF07719.13|3,TPR_2|PF07719.13|0.18,TPR_2|PF07719.13|0.00097,TPR_2|PF07719.13|1.5e-06,TPR_12|PF13424.2|37,TPR_12|PF13424.2|3.8e-08,TPR_12|PF13424.2|0.00016,TPR_8|PF13181.2|1.7e+02,TPR_8|PF13181.2|4.5,TPR_8|PF13181.2|0.00059,TPR_8|PF13181.2|0.00042,TPR_17|PF13431.2|3.9e+02,TPR_17|PF13431.2|0.35,TPR_17|PF13431.2|0.21,TPR_17|PF13431.2|4.6e-06,TPR_16|PF13432.2|0.0016,TPR_16|PF13432.2|1e-07,TPR_7|PF13176.2|2.8e+02,TPR_7|PF13176.2|1.3e+02,TPR_7|PF13176.2|0.0057,TPR_7|PF13176.2|7.6e-05,TPR_19|PF14559.2|2.9,TPR_19|PF14559.2|0.087,TPR_19|PF14559.2|1.1,TPR_19|PF14559.2|0.00013,TPR_14|PF13428.2|38,TPR_14|PF13428.2|32,TPR_14|PF13428.2|0.007,TPR_14|PF13428.2|0.004,ANAPC3|PF12895.3|0.00098,ANAPC3|PF12895.3|1.2,TPR_10|PF13374.2|5.7e+03,TPR_10|PF13374.2|94,TPR_10|PF13374.2|18,TPR_10|PF13374.2|0.00016 S_Transcript_5078:2-580(-)
PSPFSFPLFLHHHHHHQQQQRHNNNQQQEQSELINSPDLGSDASSGFCLKHFKGSDETREEEDMLLGLAHQMYKSGNYKQALENSNNVYERNPLRTDNLLLLGAIYYQLHDFDMCIARNEEAIQIEPHFAECFGNMANAWKEKGNVDLAIRYYLIAIELRPNFADAWSNLASAYMRKGRLTEAAQCCRQALAL

Click here to download the sequence:
Link to NCBI Protein BLAST