Transcript Information: S_Transcript_50857.p1


Annotated TAIR IDAT3G28730.1
Annotated Gene Namehigh mobility group
Annotated Gene Symbol(s)ATHMG, SSRP1, NFD, HMG
Annotation TypeOrtholog
Chromosome Positionchr3:10784954-10788498 | Forward length=646
E-Value9.1E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.576962029367
Replicate 212.162819884271
Replicate 39.9307040450157
Condition 2: 8 Hour
Replicate 113.533420778181
Replicate 213.623882184449
Replicate 314.073925021238
Condition 3: 24 Hour
Replicate 112.322754789566
Replicate 212.058310005364
Replicate 313.742780605352


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50857.p1 GENE.S_Transcript_50857~~S_Transcript_50857.p1 ORF type:5prime_partial len:156 (+),score=28.21,SSrecog|PF03531.10|1.2e+03,SSrecog|PF03531.10|2.6e-08 S_Transcript_50857:2-469(+)
GAAGCATTTTCTAGCTTCATTCACTTCATTCTCTCTTTCTCCCTCTGGGATCCTCTCTACTCTCTACAATCAGCAGCTATGGCGGACGGCCATCTCTTCAGTAGCATCTCACTCGTTGGTCGTACTGGCACTAATCAAGGGCAAATGAGAGTTCATGCGGGGGGTGTTTTGTGGAAAAAGCAAGGTCAGCAAGGTGGTGGAAAACTTGTTGAACTTGACAAGAGTAATATCTCGGGAATATATTGGATGAAGATTTCTAGGTCTAATCAGCTCATTGTTCGCAGTAAAGATGGCTTGTACTACAACTTCACCGGTTTTCGTGATCAGGATGTTGCAAGTTTGACCAGCTTTTTCCGAAACAGCTGTGGAATCAGTCCGGAGGAGAAACAGCTTTCTGTTAGTGGGCATAACTGGGGAGAAGTCGACTTCAATGGTTTGTTTGTTTGGATGCTGTTAATTAATGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50857.p1 GENE.S_Transcript_50857~~S_Transcript_50857.p1 ORF type:5prime_partial len:156 (+),score=28.21,SSrecog|PF03531.10|1.2e+03,SSrecog|PF03531.10|2.6e-08 S_Transcript_50857:2-469(+)
EAFSSFIHFILSFSLWDPLYSLQSAAMADGHLFSSISLVGRTGTNQGQMRVHAGGVLWKKQGQQGGGKLVELDKSNISGIYWMKISRSNQLIVRSKDGLYYNFTGFRDQDVASLTSFFRNSCGISPEEKQLSVSGHNWGEVDFNGLFVWMLLINE*

Click here to download the sequence:
Link to NCBI Protein BLAST