Transcript Information: S_Transcript_50858.p1


Annotated TAIR IDAT3G28730.1
Annotated Gene Namehigh mobility group
Annotated Gene Symbol(s)ATHMG, SSRP1, NFD, HMG
Annotation TypeOrtholog
Chromosome Positionchr3:10784954-10788498 | Forward length=646
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 146.90130773237
Replicate 241.265587876093
Replicate 341.040779988506
Condition 2: 8 Hour
Replicate 147.225208495503
Replicate 246.711591372762
Replicate 344.704069282669
Condition 3: 24 Hour
Replicate 142.509873582777
Replicate 241.130621008927
Replicate 340.907976342249


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50858.p1 GENE.S_Transcript_50858~~S_Transcript_50858.p1 ORF type:complete len:648 (+),score=187.36,SSrecog|PF03531.10|6.1e-79,Rtt106|PF08512.8|1.6e-22,HMG_box|PF00505.15|1.3e-20,HMG_box_2|PF09011.6|2.6e-17 S_Transcript_50858:97-2040(+)
ATGGCGGACGGCCATCTCTTCAGTAGCATCTCACTCGTTGGTCGTACTGGCACTAATCAAGGGCAAATGAGAGTTCATGCGGGGGGTGTTTTGTGGAAAAAGCAAGGTCAGCAAGGTGGTGGAAAACTTGTTGAACTTGACAAGAGTAATATCTCTGGAATATATTGGATGAAGATTCCTAGGTCTAATAATCAGCTCATTGTTCTCAGTAAAGATGGCTTGTACTACAACTTCACCGGTTTTCGTGATCAGGATGTTGCAAGTTTGACCAGCTTTTTCCGAAACAGCTGTGGAATCAGTCCGGAGGAGAAACAGCTTTCTGTTAGTGGGCATAACTGGGGAGAAGTCGACTTCAATGGGAACATGCTGACTTTTCTTGTAGGATCAAAACAAGCCTTTCAGCTATCATTAGCTGATGTCTCACAGACCCAGATGCAAGGGAAAAATGATGTCCTGTTGGAGTTTCACATGGATGATACAACAGGGGCCAATGAGAAAGATTCACTTATGGAAATAAGTTTTCACATACCAAATTCTAACACCCAATTTGTTGGTGATGAAAATCGTCCTTCTGCTCAAGTCTTCCACGACAAGATCATGTCTGTGGCTGATGTAGATGCAGAAGAGGCTGTTGTGACATTTGATGGTATTGCAATCCTTACTCCCAGGGGTCGGTACAGTGTTGAGCTACATCTTTCGTTCTTGCGGCTCCAAGGCCAGGCTAATGATTTTAAAATTCAGTATAGCAGTGTTGTTCGCCTCTTCTGTCTTCCAAAGTCGAACCAACCACACACTTTTGTTATTATAACACTTGATCCGCCAATCCGAAAAGGGCAAACTTTGTACCCACATATTGTGATGCAGTTTGAGACAGACTATGTGGTTGAAAGCACACTCTCCATAAGTGAGGAGCTTTTGAATACCAAGTACAAGGATAAGTTGGAATCATCTTACAAGGGGCTCATTCACGATGTGTTCACAAACATATTGCGAGCCTTATCTAGTGCCAAGGTTACAAGGCCTGGAAAATTCCGCAGCAACCAAGATGGCTATGCTGTGAAGTCATCACTGAAAGCTGAAGATGGTATTCTTTACCCACTAGAAAAAAGCTTTTTCTTCTTACCCAAGCCTCCAACTCTTATTCTTCATGAAGAGATTGATTATGTGGAATTTCAAAGGCATGTTGCTGGAGGATCCAATATGCATTACTTTGACCTTCTTATAAGACTGAAGACAGAGCAAGAACATCTGTTCAGGAACATTCAGAGGAATGAATATCACAATTTGTTTGACTTCATCAGCTCAAAGGGCTTGAAGATCATGAATTTGGGTGATGGTCATGGTCAAGCTACAGAAGGTGGGGTCTCTGCTGTTCTCCGTAGTGGTGATGATGACGCCGTTGATCCCCATCTTGAGAGAATCAGGAATGCAGCCGGAGATGAGAGTGATGAGGAGGATGAAGATTTTGTTGCGGACATGGATGATGGAGGTTCTCCAACAGATGAGTCTGATGATGAGGGATCTGATGCAAGTGGTAGTGATGATGAGAAAGAGAGGCCAGCTAAGAGAGAGAAGAAGGATCCTGTATCATCATCATTGAAGGCTTCAGGCAAGAAGAAGTCTAAAGAGGGAGGAGATGAAGACGGGTCAAAGAAGAGAAAGCAAAAGAAGAAAAAGGATCCAAATGCACCAAAAAGGGCATTGACTGGTTTTCTTTACTTCTCACAGGCAGAGCGGGATAATGTAAAGAGGGAGAACCCAGGCATTCCATTCCTAGATGTGGGTAGGGTTCTGGGAGAGAAATGGAGGAGCATGTCAGCTGAAGAGAAAGAACCTTATGAAGCAATGGCTCGTGCTGACAAGAAACGTTACAATGATGAAATTGGCGACTACAAGAACCCACAGGCTGGGAATGCAGATTCAGCTGACGAATCTGACAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50858.p1 GENE.S_Transcript_50858~~S_Transcript_50858.p1 ORF type:complete len:648 (+),score=187.36,SSrecog|PF03531.10|6.1e-79,Rtt106|PF08512.8|1.6e-22,HMG_box|PF00505.15|1.3e-20,HMG_box_2|PF09011.6|2.6e-17 S_Transcript_50858:97-2040(+)
MADGHLFSSISLVGRTGTNQGQMRVHAGGVLWKKQGQQGGGKLVELDKSNISGIYWMKIPRSNNQLIVLSKDGLYYNFTGFRDQDVASLTSFFRNSCGISPEEKQLSVSGHNWGEVDFNGNMLTFLVGSKQAFQLSLADVSQTQMQGKNDVLLEFHMDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPSAQVFHDKIMSVADVDAEEAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFCLPKSNQPHTFVIITLDPPIRKGQTLYPHIVMQFETDYVVESTLSISEELLNTKYKDKLESSYKGLIHDVFTNILRALSSAKVTRPGKFRSNQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFQRHVAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISSKGLKIMNLGDGHGQATEGGVSAVLRSGDDDAVDPHLERIRNAAGDESDEEDEDFVADMDDGGSPTDESDDEGSDASGSDDEKERPAKREKKDPVSSSLKASGKKKSKEGGDEDGSKKRKQKKKKDPNAPKRALTGFLYFSQAERDNVKRENPGIPFLDVGRVLGEKWRSMSAEEKEPYEAMARADKKRYNDEIGDYKNPQAGNADSADESDN*

Click here to download the sequence:
Link to NCBI Protein BLAST