Transcript Information: S_Transcript_5090.p1


Annotated TAIR IDAT5G45140.1
Annotated Gene Namenuclear RNA polymerase C2
Annotated Gene Symbol(s)NRPC2
Annotation TypeOrtholog
Chromosome Positionchr5:18247416-18257713 | Reverse length=1161
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.2387363359691
Replicate 28.0602724516787
Replicate 37.4016847482184
Condition 2: 8 Hour
Replicate 17.4781035378746
Replicate 26.5027506712805
Replicate 38.014758699473
Condition 3: 24 Hour
Replicate 15.9709348207624
Replicate 25.8925910098503
Replicate 36.2886964050089


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5090.p1 GENE.S_Transcript_5090~~S_Transcript_5090.p1 ORF type:complete len:750 (+),score=127.21,RNA_pol_Rpb2_6|PF00562.24|5.3e-118,RNA_pol_Rpb2_7|PF04560.16|1.5e-31,RNA_pol_Rpb2_4|PF04566.9|9.9e-23,RNA_pol_Rpb2_3|PF04565.12|1.2e-19,RNA_pol_Rpb2_5|PF04567.13|3.1e-14,RNA_pol_Rpb2_5|PF04567.13|1.3e+04 S_Transcript_5090:333-2582(+)
ATGCGAAACGGTTTAGGGTGGACAGGAAAGGCGTGGCACAAGTGGACATTTGACATTTTCTATCTTCTCTCCATTTTACTTCCATATGTGAACAATGAGTGTCTATTGACTTTCATCTCAAGTTTGTCTTCTAATTGTCAGGTCCTTGCGAGGCTGTCTTTCATTCAGGCCATGGGGTTTCTTACAAAAGTTCAGCCACAGTTTGAGAAGTCCAGAAAAGTTAGTGGACCCAGAGCTTTGCAGCCTAGCCAGTGGGGAATGCTTTGCCCTTGTGACACACCAGAAGGTGAATCTTGTGGATTGGTTAAAAACTTGGCGCTTATGACTCATGTCACTACCGATGAAGAGGAAGGTCCATTAATATCTCTGTGTTACTGCCTGGGGGTTGAGGACCTGGAGTTGCTGTCTGGAGAAGAGCTGCACTCCTCAAATTCTTTTCTTGTGATATTTAATGGACTCATTCTAGGCAAGCACAGGAGGCCACAGCACTTTGTCACTATCATGAGGAGATTGCGAAGGGCTGGCAAGATTGGCGAGTTTGTCAGTGTCTATGTGAATGAGAAACAGCGTTGTGTGTATATAGCTTCTGATGGAGGTCGTGTTTGTCGCCCACTTGTTATCGCTGATAAAGGTGTATCAAGGGTCAAACAAGAACACATGAAGGAGTTGTCGGATGGGGTCCGCACCTTTAATGATTTCTTGCGTGATGGTTTGATCGAGTATCTTGATGTTAATGAGGAAAATAATGCGTTGATTGCCTTGTATGAGGAAGATGCGACGCCAGAAACAACTCATATCGAAATTGAGCCATTTACAATTCTAGGTGTATGTGCTGGGCTAATCCCTTTTCCCCATCACAATCAGTCACCCAGAAATACATATCAGTGCGCTATGGGAAAGCAAGCTATGGGAAATATTGCTTATAATCAGCTTTTTCGCATGGACACATTACTGTATCTCTTAGTGTACCCTCAACGGCCTTTGCTGACGACGAGAACAATTGAGTTGGTTCAATATGATAAGCTTGGTGCTGGACAAAATGCAACTGTTGCTGTGATGAGCTTCAGTGGATATGACATAGAGGATGCTATAGTTATGAATAAATCATCATTGGATCGAGGTTTTGGACGTTGTATTGTGATGAAAAAGAAGGGGACGATCATGCAGAGGTTTGAGAATAATGCATCTGAAAGAATCATCCCACCCAGAAGAGAGGGGTTTTCTGCCGAAAGAATGCAGGCATTGGATGATGATGGTATAGCTTCTCCAGGGCAAATTATTAGACAAGATGATTTCTTGGTAAACAAGCAAACACCACTAATTACTAGGGGGCCAACCACTGCAGGAGTAATACCGGATAGTCAGTATAGGCCAAGCCCCCTCAAACATGGTGGTCTTGCTGGAGAAACAGCAGTAGTAGATCGGGCAACGCTCTTCTCTGATAAGAATAGCAATCTATGCATCAATTTTATCATTCGTCAGACACGCCGGCCAGAGGTCGGTGACAAGTTCAGCAGCAGACATGGGCAGAAAGGTGTATGTGGTACCATTGTTCAGCAGGAGGATTTTGTTTTTTCTGAGCGTGGCATCTGCCCTGATCTGATTATGAATCCTCATGGGTTTCCAAGTCGAATGACTGTAGGTAAGATGATTGAGCTTTTAGGTGGTAAAGCTGGGGTGTCATGCGGCAGATTTCACTATGGGAGTGCCTTTGGGGAGCCGAGTGGCCATGCTGACAAAGTTGAAACAATAAGTGAAACCCTTGTTAAGCATGGATTCAGCTACAGTGGGAAAGACTTGCTCTACTCAGGCATAACAGGTTTGCCACTGCAAGCATACATATTCATGGGGCCCATCTACTATCAGAAGTTAAAACACATGGTTCTTGATAAAATGCACGCACGAGGGTTTGGTCCCCGTGTTCTCGTGACTAGGCAGCCAACTGAAGGAAAGAGTCGAAATGGAGGATTAAGAGTCGGAGAAATGGAACGAGATTGCTTAATTGCTTATGGTGCTAGTAATTTGATATATGAACGCTTGATGCTTTCAAGTGACCCTTTTCAAGCTCAGGTATGTAGAAAATGTGGGATACTGGGATACTACAACCATAAATTGAAATCCGGCATATGTAGTGCCTGTAAAAATGGGGATAATATATCTACAATGAAATTGCCGTACGCTTGCAAGCTTCTATTTCAGGAACTCCAATCGATGAATATTGTTCCTCGTCTGAAATTGGCTGATGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5090.p1 GENE.S_Transcript_5090~~S_Transcript_5090.p1 ORF type:complete len:750 (+),score=127.21,RNA_pol_Rpb2_6|PF00562.24|5.3e-118,RNA_pol_Rpb2_7|PF04560.16|1.5e-31,RNA_pol_Rpb2_4|PF04566.9|9.9e-23,RNA_pol_Rpb2_3|PF04565.12|1.2e-19,RNA_pol_Rpb2_5|PF04567.13|3.1e-14,RNA_pol_Rpb2_5|PF04567.13|1.3e+04 S_Transcript_5090:333-2582(+)
MRNGLGWTGKAWHKWTFDIFYLLSILLPYVNNECLLTFISSLSSNCQVLARLSFIQAMGFLTKVQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHSSNSFLVIFNGLILGKHRRPQHFVTIMRRLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGVSRVKQEHMKELSDGVRTFNDFLRDGLIEYLDVNEENNALIALYEEDATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDTLLYLLVYPQRPLLTTRTIELVQYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKKGTIMQRFENNASERIIPPRREGFSAERMQALDDDGIASPGQIIRQDDFLVNKQTPLITRGPTTAGVIPDSQYRPSPLKHGGLAGETAVVDRATLFSDKNSNLCINFIIRQTRRPEVGDKFSSRHGQKGVCGTIVQQEDFVFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVETISETLVKHGFSYSGKDLLYSGITGLPLQAYIFMGPIYYQKLKHMVLDKMHARGFGPRVLVTRQPTEGKSRNGGLRVGEMERDCLIAYGASNLIYERLMLSSDPFQAQVCRKCGILGYYNHKLKSGICSACKNGDNISTMKLPYACKLLFQELQSMNIVPRLKLADA*

Click here to download the sequence:
Link to NCBI Protein BLAST