Transcript Information: S_Transcript_5092.p1


Annotated TAIR IDAT5G45140.1
Annotated Gene Namenuclear RNA polymerase C2
Annotated Gene Symbol(s)NRPC2
Annotation TypeOrtholog
Chromosome Positionchr5:18247416-18257713 | Reverse length=1161
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.5985163185087
Replicate 28.9301767256608
Replicate 39.7743248555943
Condition 2: 8 Hour
Replicate 112.185937324076
Replicate 211.028098227167
Replicate 311.221835114792
Condition 3: 24 Hour
Replicate 110.864651048232
Replicate 210.25267666549
Replicate 311.454455792447


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5092.p1 GENE.S_Transcript_5092~~S_Transcript_5092.p1 ORF type:complete len:1134 (+),score=220.51,RNA_pol_Rpb2_6|PF00562.24|1.3e-117,RNA_pol_Rpb2_1|PF04563.11|1.6e-51,RNA_pol_Rpb2_7|PF04560.16|2.7e-31,RNA_pol_Rpb2_4|PF04566.9|1.7e-22,RNA_pol_Rpb2_2|PF04561.10|6.8e-21,RNA_pol_Rpb2_3|PF04565.12|3.4e-19,RNA_pol_Rpb2_5|PF04567.13|5e-14 S_Transcript_5092:275-3676(+)
ATGGATAAGCAATTCCTTTCAGCCCCCGTAAAATCACCAGTCGACAAATTCCAACTCATTCCGGAGTTCTTGAAGGTGAGAGGCCTTGTGAAGGAACATCTGGATTCTTACAACTACTTTGTGAATACCGGCATAAAGAAGATTATGCGAGTCAACAGTGAAATTAGATCAACTGTTGACCCTGAAATCTATCTCAAATTTAAAGATATAAAAGTTGGCGAACCATCAATTGTGTTGGATGGTGTTGCTGAGAAGATCACGCCACATTCCTGCAGGCTATCAGACATGACTTATGCAGCACCTATAGAAGCCCATATAGAGTATGTCACTGGAAGTCGTGGTGAAAAAGAAATCCGTGAGAAGAAAGATGTTGTTATAGGAAGAATGCCTGTGATGCTGCGAAGTCATTGCTGTGTTCTATATGGAAAGGATGAGACTGAGCTAGCCAAACTTGGTGAATGCCCACTTGATCCTGGAGGCTATTTTATTGTGAAAGGAAATGAGAAGGTGATTATGATGCAGGAACAACTTTCAAATAACAGAATAATTATTGATATTGATAAGAAGGGAAATTTGATTGCATCTGTTACAAGCAGCACAGCAACACTAAGGAGCAAAACAGTCATAGTCATGGAAAAAGATAAGATATATCTACAGCTCAATCAGTTTCAGGGGAAGGTTCCTATATTGGCTGTAATGAAAGCTATGGGATTGGAGACTGACCAAGAAGTTGTACAAATGGTCGGAAGGGATCCACGTTACAGTGATCTACTCCTTCCTTCTATTGAGGAATGTGCGGTTTGTGGTGTAAACACTCAACAGCAGGCGCTTGAGTTCCTTGAGAAAAAGGTCAAAAAGCCGCAATATACTGTTGCTTTGCCACAAAAGGACAACAAAGCTTGGAAGGTCCTCCATGATGTGTTTCTTGCTCATGTTCCGGTTCGCAAGAATAACTTCCGCCCCAAGTGTATATACACTGCTGTAATGTTGAGGCGCATGTTGGAGGCGTTCTTAAACAAAGATGCAGTGGATGACAAAGATTATGTTGGGAATAAGAGGTTTGAGCTGTCTGGTCAGTTGCTTTCTCTGCTTTTTGAGGACTTGTTCAAGACCATGAATACAGAGGTGAAAAAAAAAGTGGATGCAATTTTGTCAAAGCCATCTCGATCTAGCAGATTTGATTTTTCCCAGCATATAATCAAAGACACTATCAGCTTTGGCTTAGAAAGAGCAATTTCGACTGGCAACTGGTATGTGAAACGGTTTAGAGTGGACAGGAAAGGCGTGACACAGGTCCTTGGGAGGCTGTCTTTCATTCAGGCCATGGGGTTTCTTACAAAAGTTCAGCCACAGTTTGAGAAGTCCAGAAAAGTTAGTGGACCCAGAGCTTTGCAGCCTAGCCAGTGGGGAATGCTTTGCCCTTGTGACACACCAGAAGGTGAATCTTGTGGATTGGTTAAAAACTTGGCGCTTATGACTCATGTCACTACCGATGAAGAGGAAGGTCCATTAATATCTCTGTGTTACTGCCTGGGGGTTGAGGACCTGGAGTTGCTGTCTGGAGAAGAGCTGCACTCCTCAAATTCTTTTCTTGTGATATTTAATGGACTCATTCTAGGCAAGCACAGGAGGCCACAGCACTTTGTCACTATCATGAGGAGATTGCGAAGGGCTGGCAAGATTGGCGAGTTTGTCAGTGTCTATGTGAATGAGAAACAGCGTTGTGTGTATATAGCTTCTGATGGAGGTCGTGTTTGTCGCCCACTTGTTATCGCTGATAAAGGTGTATCAAGGGTCAAACAAGAACACATGAAGGAGTTGTCGGATGGGGTCCGCACCTTTAATGATTTCTTGCGTGATGGTTTGATCGAGTATCTTGATGTTAATGAGGAAAATAATGCGTTGATTGCCTTGTATGAGGAAGATGCGACGCCAGAAACAACTCATATCGAAATTGAGCCATTTACAATTCTAGGTGTATGTGCTGGGCTAATCCCTTTTCCCCATCACAATCAGTCACCCAGAAATACATATCAGTGCGCTATGGGAAAGCAAGCTATGGGAAATATTGCTTATAATCAGCTTTTTCGCATGGACACATTACTGTATCTCTTAGTGTACCCTCAACGGCCTTTGCTGACGACGAGAACAATTGAGTTGGTTCAATATGATAAGCTTGGTGCTGGACAAAATGCAACTGTTGCTGTGATGAGCTTCAGTGGATATGACATAGAGGATGCTATAGTTATGAATAAATCATCATTGGATCGAGGTTTTGGACGTTGTATTGTGATGAAAAAGAAGGGGACGATCATGCAGAGGTTTGAGAATAATGCATCTGAAAGAATCATCCCACCCAGAAGAGAGGGGTTTTCTGCCGAAAGAATGCAGGCATTGGATGATGATGGTATAGCTTCTCCAGGGCAAATTATTAGACAAGATGATTTCTTGGTAAACAAGCAAACACCACTAATTACTAGGGGGCCAACCACTGCAGGAGTAATACCGGATAGTCAGTATAGGCCAAGCCCCCTCAAACATGGTGGTCTTGCTGGAGAAACAGCAGTAGTAGATCGGGCAACGCTCTTCTCTGATAAGAATAGCAATCTATGCATCAATTTTATCATTCGTCAGACACGCCGGCCAGAGGTCGGTGACAAGTTCAGCAGCAGACATGGGCAGAAAGGTGTATGTGGTACCATTGTTCAGCAGGAGGATTTTGTTTTTTCTGAGCGTGGCATCTGCCCTGATCTGATTATGAATCCTCATGGGTTTCCAAGTCGAATGACTGTAGGTAAGATGATTGAGCTTTTAGGTGGTAAAGCTGGGGTGTCATGCGGCAGATTTCACTATGGGAGTGCCTTTGGGGAGCCGAGTGGCCATGCTGACAAAGTTGAAACAATAAGTGAAACCCTTGTTAAGCATGGATTCAGCTACAGTGGGAAAGACTTGCTCTACTCAGGCATAACAGGTTTGCCACTGCAAGCATACATATTCATGGGGCCCATCTACTATCAGAAGTTAAAACACATGGTTCTTGATAAAATGCACGCACGAGGGTTTGGTCCCCGTGTTCTCGTGACTAGGCAGCCAACTGAAGGAAAGAGTCGAAATGGAGGATTAAGAGTCGGAGAAATGGAACGAGATTGCTTAATTGCTTATGGTGCTAGTAATTTGATATATGAACGCTTGATGCTTTCAAGTGACCCTTTTCAAGCTCAGGTATGTAGAAAATGTGGGATACTGGGATACTACAACCATAAATTGAAATCCGGCATATGTAGTGCCTGTAAAAATGGGGATAATATATCTACAATGAAATTGCCGTACGCTTGCAAGCTTCTATTTCAGGAACTCCAATCGATGAATATTGTTCCTCGTCTGAAATTGGCTGATGCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5092.p1 GENE.S_Transcript_5092~~S_Transcript_5092.p1 ORF type:complete len:1134 (+),score=220.51,RNA_pol_Rpb2_6|PF00562.24|1.3e-117,RNA_pol_Rpb2_1|PF04563.11|1.6e-51,RNA_pol_Rpb2_7|PF04560.16|2.7e-31,RNA_pol_Rpb2_4|PF04566.9|1.7e-22,RNA_pol_Rpb2_2|PF04561.10|6.8e-21,RNA_pol_Rpb2_3|PF04565.12|3.4e-19,RNA_pol_Rpb2_5|PF04567.13|5e-14 S_Transcript_5092:275-3676(+)
MDKQFLSAPVKSPVDKFQLIPEFLKVRGLVKEHLDSYNYFVNTGIKKIMRVNSEIRSTVDPEIYLKFKDIKVGEPSIVLDGVAEKITPHSCRLSDMTYAAPIEAHIEYVTGSRGEKEIREKKDVVIGRMPVMLRSHCCVLYGKDETELAKLGECPLDPGGYFIVKGNEKVIMMQEQLSNNRIIIDIDKKGNLIASVTSSTATLRSKTVIVMEKDKIYLQLNQFQGKVPILAVMKAMGLETDQEVVQMVGRDPRYSDLLLPSIEECAVCGVNTQQQALEFLEKKVKKPQYTVALPQKDNKAWKVLHDVFLAHVPVRKNNFRPKCIYTAVMLRRMLEAFLNKDAVDDKDYVGNKRFELSGQLLSLLFEDLFKTMNTEVKKKVDAILSKPSRSSRFDFSQHIIKDTISFGLERAISTGNWYVKRFRVDRKGVTQVLGRLSFIQAMGFLTKVQPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHSSNSFLVIFNGLILGKHRRPQHFVTIMRRLRRAGKIGEFVSVYVNEKQRCVYIASDGGRVCRPLVIADKGVSRVKQEHMKELSDGVRTFNDFLRDGLIEYLDVNEENNALIALYEEDATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDTLLYLLVYPQRPLLTTRTIELVQYDKLGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKKGTIMQRFENNASERIIPPRREGFSAERMQALDDDGIASPGQIIRQDDFLVNKQTPLITRGPTTAGVIPDSQYRPSPLKHGGLAGETAVVDRATLFSDKNSNLCINFIIRQTRRPEVGDKFSSRHGQKGVCGTIVQQEDFVFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADKVETISETLVKHGFSYSGKDLLYSGITGLPLQAYIFMGPIYYQKLKHMVLDKMHARGFGPRVLVTRQPTEGKSRNGGLRVGEMERDCLIAYGASNLIYERLMLSSDPFQAQVCRKCGILGYYNHKLKSGICSACKNGDNISTMKLPYACKLLFQELQSMNIVPRLKLADA*

Click here to download the sequence:
Link to NCBI Protein BLAST