Transcript Information: S_Transcript_509745.p1


Annotated TAIR IDAT2G13770.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:5736603-5737847 | Forward length=343
E-Value7.5E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.20263706524249
Replicate 20.44797542248761
Replicate 30.23404487415737
Condition 2: 8 Hour
Replicate 10.21650142453942
Replicate 20.17034402517558
Replicate 30.16230340815976
Condition 3: 24 Hour
Replicate 10.60988253400136
Replicate 20.51770127966276
Replicate 30.19204602338921


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_509745.p1 GENE.S_Transcript_509745~~S_Transcript_509745.p1 ORF type:complete len:394 (+),score=29.56,Plant_tran|PF04827.10|1.9e-105,DDE_Tnp_4|PF13359.2|2.8e-11 S_Transcript_509745:271-1452(+)
ATGATCATTTTATACAATGATTATTTTGCTCAACACCCTACTTATACTCCTGAAATATTTCGACTTAGATTCCGCATGCAAAAACATGTTTTCCTTCGTATCGTAGAGGCCCTCGCTTCTAGTGACCAATACTTTCAACAACGACCTGATGCTACTGGTAGATTAGGTATGTCTACTCTACAAAAATGCACTGCAGCTATTCGAGTCCTAGCATATGGTTCATCATATGATTCTGTTGATGAATATCTGCGTATGAGTAAGAATGTAGTGAGAGACTCCATGATACATTTTGTAGAGGGTATTATTTCTAATTTTGGGAATGAATATCTTAGAAAACCAACTCAATCGGATCTAGCTAGGTTACTTTATATGGGCGAGCAAAGAGGATTTCCAGGGATGATGGGAAGTATAGATTGTATGCACTGGGAGTGGAAAAATTGTCCTACTGCATGGGCTGGACAATATTCAGGCAGGTATGGAAAACCAACTGTTGTTTTAGAAGCTGTAGCATCGGAAGATCTTTGGATTTGGCATGCATTCTTTGGTACTGCTGGCTCATCGAATGATATTAATGTTCTACATAGGTCCCCTTTGTTTGATGATATTCTTAAAGGTATATCCCCTCAAGTGTCATTTATGGTAAATGGTAATCAATATAATATGGGATATTATCTAACCGATGGAATATATCCTCAATGGGCTGCATTTGTAAAATCAATAAACTCCCCACAAGTTCAAAAACAAGTTTTGTTTGCTCGTCATCAGGAGGCCGTGAGAAAAGATGTCGAGCGTGCATTCGGAGTCCTCCAAGCAAGATTTGCAGTTGTTCGCTACCCATTTCTTGTTTGGGATAAGTTTTTACTTGCAAAAATTATGATAGCTTGTATCATAATGCATAATATGATTGTGGAAGATGAACGAGACACGTTCTTGCATTATAAGGATCCAACAGAATTCCTTCTTGAAAGATCGAGAGCTGGAGCATGTAGAGCAAATACGAAAGGTCAGGATTCAAATACTACTAATGTCGATGACGGAACTCTTCAATACTCAACTGATAGGATATTCGATATCCATTCATATATGGACACTGCATCACAACTAAAGAATCCACATATCCATCATGCTCTAAAAAATGATTTAATAGAACACATATGGCACCGATATGGGCCTCGTACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_509745.p1 GENE.S_Transcript_509745~~S_Transcript_509745.p1 ORF type:complete len:394 (+),score=29.56,Plant_tran|PF04827.10|1.9e-105,DDE_Tnp_4|PF13359.2|2.8e-11 S_Transcript_509745:271-1452(+)
MIILYNDYFAQHPTYTPEIFRLRFRMQKHVFLRIVEALASSDQYFQQRPDATGRLGMSTLQKCTAAIRVLAYGSSYDSVDEYLRMSKNVVRDSMIHFVEGIISNFGNEYLRKPTQSDLARLLYMGEQRGFPGMMGSIDCMHWEWKNCPTAWAGQYSGRYGKPTVVLEAVASEDLWIWHAFFGTAGSSNDINVLHRSPLFDDILKGISPQVSFMVNGNQYNMGYYLTDGIYPQWAAFVKSINSPQVQKQVLFARHQEAVRKDVERAFGVLQARFAVVRYPFLVWDKFLLAKIMIACIIMHNMIVEDERDTFLHYKDPTEFLLERSRAGACRANTKGQDSNTTNVDDGTLQYSTDRIFDIHSYMDTASQLKNPHIHHALKNDLIEHIWHRYGPRT*

Click here to download the sequence:
Link to NCBI Protein BLAST