Transcript Information: S_Transcript_50994.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value2E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.7173725554933
Replicate 28.6074560157121
Replicate 310.668667958675
Condition 2: 8 Hour
Replicate 111.889941088626
Replicate 212.841240474821
Replicate 311.119926478533
Condition 3: 24 Hour
Replicate 111.591829057042
Replicate 210.027635615245
Replicate 38.4450492477519


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_50994.p1 GENE.S_Transcript_50994~~S_Transcript_50994.p1 ORF type:complete len:669 (+),score=67.57,UBN2_3|PF14244.2|6.1e-19,UBN2|PF14223.2|8.4e-15,gag_pre-integrs|PF13976.2|4.2e-13,gag_pre-integrs|PF13976.2|1.3e+04,rve|PF00665.22|1.1e-11,DUF4219|PF13961.2|5.7e-10,DUF4219|PF13961.2|3.8e+03,Retrotrans_gag|PF03732.13|6.4e-08,UBN2_2|PF14227.2|5.6e-08,UBN2_2|PF14227.2|3e+03,zf-CCHC|PF00098.19|8e-06 S_Transcript_50994:1778-3784(+)
ATGGCGGATCTCGTTAATTCAGCTAGCACACTAGAAAAATTAAATGGTAGCAACTATAGTACTTGGAGTATTCGGATAAAGTACTATTTGTTAGGACAAGATTTATGGAGCATAGTTGGTGGAGATGATACAACACCACCAACTGATGATACGGAGAAAAAACAATGGAAGATTAAGGCCGGAAAGGCCATGTACGTATTGTCCGTGACGGTGGAGGACGAGTACTTGCAACGAATTAAAGATTTGAAGACCCCAAAGGAAGCGTGGGATACCTTAGAAGCATTATTTACAAAGAAGAATGATGCTAAATTGCAGCGGCTAGAAAACGAGCTTATGACCGTCAAACAAGGAGACATGACGGTAAGTCAATATTTCACTAAAGTTAAATCTATATGTAGTGAAATTGCTAAATTAGATTCAGAGAGTGCAATAAACGAGGCAAGAATACGGAGAATTTTAATTCACGGGTTAGACCCTAAATACAATAGCCTCGTTATTGCAACTCGTGGTTGGGCTAAAGAGCCTACCATAACTGAACTAGAAAATATCTTGGCCAACCAAGAAGAGTTGGACAAGCAAATGTCGGGAGTCTCCATAAAGGAGGATGAGAAGGCTCTCTTCACTAAAAGAAGAGCACTAACGGAACGAGATAAGACCGCTGCAAAATCAAATGGCGATGGTGAAGGTTCCAGAAGGAAACAACAAAATTGGCAACGAGGACGACGTGGACGAGGCACGTGGCAAGGGGGAGCTCGACAAGCTCGTGGCAAGGATGATCAAGAAGAAAAGAGGTATCGCCGCCAAGAAGGTCGTTGTTACAAGTGCGGTGGTAAAGGACATTATGCTCGAGATTGCAAGTCTCCCCGAGTAGAAGGTAATGCTGCAACCTTCACTAAGAATGATGGTGAGGAAGAATGGGACTTCCAGGCGTCCTTTGCAATGGAAGAGCCCATTCAACAAGGAGAAGAAGAAGTAGCTGCATCTTGTATCGAAGAACCGATACAAGAGATGGCACTCGTTACAATGAGTAATGAGTCTATTAACTATAATGATGACTGGATCGTGGACTCTGGATGCTCCAATCATATGACGGGAGATAAGGACAAGCTACACAGCATGTCCGAGTACAAAGGGGGACGTGTTGTTGTTACGGCGAATAACTCGAAGCTACCAATTACCCATATCGGTAGCAGCACAGTTGTCCCTCGGTTTAGTCCACACCAAGTGCAGCTACAAAATGTATACCATGTGCCAGGTATGAAGAAAAATCTCTTATCTGTCTCTCAATTAACATCGTCGGGTAATTATGTGGTGTTTGGACCGAATGATGTTAAAGTGTATAGAAGCTTGAAGGCTACATCGCCTCCACTCATGGAAGGACGGAGGTTAGAGTCTGTCTATGTAATGTCAGCCCAAGCTGCATATGTAGACAAGACCAAGAAAAATGAGACAGCGGACTTGTGGCACGCAAGGTTAGGACATGTGAGTTATCACAAGTTAAAGGCAATGATGAAGAAGTCTATGGTGAAGGGACTTCCATCATTAGAGGTTCGTGAAGATGTTGTGTGTGCAGGATGCCAATATGGGAAAGCACACCAACTACCATACGAGGAGTCCATTTTTAAAGCAAAGGCACCGTTGGAGCTAGTGCACTCGGATGTCTTTGGACGAGTAAAGCATCCATCCATCTCCGGCTACAGGTACATGATAACTTTTATTGATGATTTCTCAAGATATGTTTGGGTGGATTTTATGAAAGAAAAATCGGAGGCACTAGCTAAGTTTAAAGAGTTTAAGGAGAAAGTTGAAAGTGAAGTAGGCCGTCAAATAAGGTGCCTATGTACGGATAACGGGGGAGAATATACCTCAAAGGAGTTCTCCCGCTATCTTCGCGTGTGCAAGTTGAAAAAGGCGTTATACGGGCTAAAACAAGCACCAAGAGTCTTAACGGAAACAAAGTTGAAGAATTTCGAAGACGACTTGGTATGGCTACAAGATCCAACATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_50994.p1 GENE.S_Transcript_50994~~S_Transcript_50994.p1 ORF type:complete len:669 (+),score=67.57,UBN2_3|PF14244.2|6.1e-19,UBN2|PF14223.2|8.4e-15,gag_pre-integrs|PF13976.2|4.2e-13,gag_pre-integrs|PF13976.2|1.3e+04,rve|PF00665.22|1.1e-11,DUF4219|PF13961.2|5.7e-10,DUF4219|PF13961.2|3.8e+03,Retrotrans_gag|PF03732.13|6.4e-08,UBN2_2|PF14227.2|5.6e-08,UBN2_2|PF14227.2|3e+03,zf-CCHC|PF00098.19|8e-06 S_Transcript_50994:1778-3784(+)
MADLVNSASTLEKLNGSNYSTWSIRIKYYLLGQDLWSIVGGDDTTPPTDDTEKKQWKIKAGKAMYVLSVTVEDEYLQRIKDLKTPKEAWDTLEALFTKKNDAKLQRLENELMTVKQGDMTVSQYFTKVKSICSEIAKLDSESAINEARIRRILIHGLDPKYNSLVIATRGWAKEPTITELENILANQEELDKQMSGVSIKEDEKALFTKRRALTERDKTAAKSNGDGEGSRRKQQNWQRGRRGRGTWQGGARQARGKDDQEEKRYRRQEGRCYKCGGKGHYARDCKSPRVEGNAATFTKNDGEEEWDFQASFAMEEPIQQGEEEVAASCIEEPIQEMALVTMSNESINYNDDWIVDSGCSNHMTGDKDKLHSMSEYKGGRVVVTANNSKLPITHIGSSTVVPRFSPHQVQLQNVYHVPGMKKNLLSVSQLTSSGNYVVFGPNDVKVYRSLKATSPPLMEGRRLESVYVMSAQAAYVDKTKKNETADLWHARLGHVSYHKLKAMMKKSMVKGLPSLEVREDVVCAGCQYGKAHQLPYEESIFKAKAPLELVHSDVFGRVKHPSISGYRYMITFIDDFSRYVWVDFMKEKSEALAKFKEFKEKVESEVGRQIRCLCTDNGGEYTSKEFSRYLRVCKLKKALYGLKQAPRVLTETKLKNFEDDLVWLQDPT*

Click here to download the sequence:
Link to NCBI Protein BLAST