Transcript Information: S_Transcript_513249.p1


Annotated TAIR IDAT5G45320.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26350.1); Has 253 Blast hits to 253 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 253; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:18362354-18363053 | Reverse length=198
E-Value3E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.71927030365353
Replicate 20.39752773977504
Replicate 30.33230155105587
Condition 2: 8 Hour
Replicate 10.38424126697537
Replicate 20
Replicate 30.38406932621588
Condition 3: 24 Hour
Replicate 10.19680075216751
Replicate 20.40835696533959
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_513249.p1 GENE.S_Transcript_513249~~S_Transcript_513249.p1 ORF type:3prime_partial len:111 (-),score=12.32 S_Transcript_513249:2-331(-)
ATGAGGCCACACACCCGCTCCCAACGTACCCATCCCTTGATTTGGTGCCTAGCCATTATTTGCACCATCTTGACAGTCATTGTTATCATAATTGGCATTGTTGTTTTCATAGGCTACCTAGCCATCAAACCAAGCATACCATATGTTAGTGTGACACAAGCTCATTTAGACAAGTTCGATGCTGATCAAGCTGGGCTGCTAACCACTAGGCTAACTATCGTTTTCAAGGCCGAAAATGACAACCCCAAGGCCCATGCTAGCTTCACTGGCTTCTTTTATCACTTGGCATTTGATGGGGTTGAAATTGCAAGATTGAGGAATTGGGACTTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_513249.p1 GENE.S_Transcript_513249~~S_Transcript_513249.p1 ORF type:3prime_partial len:111 (-),score=12.32 S_Transcript_513249:2-331(-)
MRPHTRSQRTHPLIWCLAIICTILTVIVIIIGIVVFIGYLAIKPSIPYVSVTQAHLDKFDADQAGLLTTRLTIVFKAENDNPKAHASFTGFFYHLAFDGVEIARLRNWDF

Click here to download the sequence:
Link to NCBI Protein BLAST